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[179535_at]

Description F09C6.2 /REP_DB=WormBase Gene ID /WP=CE15761 /TR=O45329 /GB=CAB04070.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 02      6grp_total > 24      4grp_total > 46      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 353
1 2 3 4 range
A 349.1
(3)
P 		124.6
(-1.3)
P 		75.9
(-2.3)
P 		38.5
(-3)
A 		311
B 358.7
(3)
P 		121.2
(-1.9)
P 		67.7
(-3)
P 		82.4
(-2.7)
A 		291
C 391.9
(3)
P 		146.9
(-1.3)
P 		82.5
(-2.5)
P 		51.4
(-3)
A 		341
avr 366.6
(3) 		130.9
(-1.6) 		75.4
(-2.7) 		57.4
(-3) 		309

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 276.7
(3)
P 		167.1
(0.3)
P 		266.3
(2.7)
P 		107
(-1.2)
P 		67.9
(-2.2)
P 		34.9
(-3)
A 		242
B 343.6
(3)
P 		219.6
(0.6)
P 		186.3
(-0.1)
P 		145.8
(-0.9)
P 		64.6
(-2.4)
P 		36.2
(-3)
P 		307
C 250.5
(3)
P 		221.4
(2.1)
P 		124.5
(-0.8)
P 		109.5
(-1.3)
P 		55.4
(-2.9)
P 		51.6
(-3)
A 		199
avr 290.3
(3) 		202.7
(0.9) 		192.4
(0.6) 		120.8
(-1.1) 		62.6
(-2.5) 		40.9
(-3) 		249
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 127.1
(3)
P 		27
(-1.9)
P 		19.8
(-2.3)
P 		5.6
(-3)
A 		122
B 114.4
(3)
P 		29.9
(-2.1)
P 		15.7
(-3)
P 		17.6
(-2.9)
A 		99
C 129.7
(3)
P 		42.2
(-1.3)
P 		28.7
(-2)
P 		8.7
(-3)
A 		121
avr 123.7
(3) 		33
(-1.8) 		21.4
(-2.4) 		10.6
(-3) 		113

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 51
(2)
P 		59.4
(3)
P 		58
(2.8)
P 		27.1
(-0.8)
P 		20.5
(-1.6)
P 		8.5
(-3)
A 		51
B 119.5
(3)
P 		73.1
(0.4)
P 		45.2
(-1.2)
P 		38.6
(-1.6)
P 		26.3
(-2.3)
P 		13.5
(-3)
P 		106
C 92.9
(3)
P 		67.5
(1)
P 		31.7
(-1.9)
P 		22
(-2.6)
P 		17.9
(-3)
P 		17.3
(-3)
A 		76
avr 87.8
(3) 		66.7
(1.3) 		45
(-0.4) 		29.2
(-1.7) 		21.6
(-2.3) 		13.1
(-3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14214
Sequence Type Exemplar sequence
Representative Public ID F09C6.2 NCBI
Target Description F09C6.2 /REP_DB=WormBase Gene ID /WP=CE15761 /TR=O45329 /GB=CAB04070.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074866(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074866 NCBI Caenorhabditis elegans F09C6.2 (F09C6.2) mRNA, complete cds. 11/11 None
GENEFINDER00000006356 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16891867:16893493:1 9/11 None
F09C6.2 ENSEMBL cdna:known chromosome:CEL140:V:16891867:16893267:1 gene:F09C6.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000006343 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16891866-16893267(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F09C6.2
Entrez Gene 184231 Entrez gene
SwissProt O45329 EMBL-EBI
WormBase CE38321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 1.0E-171
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 1.0E-168
blast CAB04070 Hypothetical protein F09C6.2 [Caenorhabditis elegans] ref|NP_507267.2| F09C6.2 [Caenorhabditis elegans] 1.0E-121
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 1.0E-68
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 1.0E-65
blast CAB04073 Hypothetical protein F09C6.6 [Caenorhabditis elegans] ref|NP_507270.1| F09C6.6 [Caenorhabditis elegans] 6.0E-58
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 5.0E-46
blast AAC78152 Hypothetical protein F52D2.1 [Caenorhabditis elegans] ref|NP_508358.1| F52D2.1 [Caenorhabditis elegans] 4.0E-43
blast AAK39347 Hypothetical protein Y59E1A.1 [Caenorhabditis elegans] ref|NP_508355.2| Y59E1A.1 [Caenorhabditis elegans] 1.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.1E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 4.7E-9
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.1E-50
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 6.0E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 4.2E-42
Sequence
Target Sequence 
>C. ELEGANS:179535_AT
caaactttctcgtttctcattcgaaaatgttcttactattctcccattcttcgatgcaca
agaactccaaataatcgatttgttgacgtctgtcctggctagccatttcgaactgataac
ccatctgagccaatggaaaaattcaaaatctctgaattttccgcgtaatatcgacagtaa
agaagtttcccatatgtttcatttcgaaaacttcaatatcaaaatgctcaacttcgatac
tcaagctgctgtgaaaatgagagatgatctaatgagacgaagtacattcaaaagttgcag
tatcgtctttaataaatttgagtcgccgtcaaatattgaacttgcaaaagtattcagacc
ggactgtactggaggctataaaagatatagggacgatactggcgacgatgaatttgcaat
taaatattcaaatgatcacttgtactacttttcaattaaatgtgagtatggatggcaata
tgaatttactttctctgtgacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAACTTTCTCGTTTCTCATTCGAA 528 191 462 Antisense
GAAAATGTTCTTACTATTCTCCCAT 556 353 484 Antisense
TTCTCCCATTCTTCGATGCACAAGA 146 693 500 Antisense
TCTGTCCTGGCTAGCCATTTCGAAC 642 607 550 Antisense
GAACTGATAACCCATCTGAGCCAAT 278 349 571 Antisense
GAATTTTCCGCGTAATATCGACAGT 646 323 615 Antisense
AACTTCGATACTCAAGCTGCTGTGA 621 137 691 Antisense
AGACCGGACTGTACTGGAGGCTATA 77 69 817 Antisense
AGGGACGATACTGGCGACGATGAAT 131 59 850 Antisense
ATGATCACTTGTACTACTTTTCAAT 594 45 893 Antisense
ATGAATTTACTTTCTCTGTGACAAG 286 43 941 Antisense
Sequence Source Affymetrix Proprietary Database