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[179534_s_at]

Description T23F1.5 /REP_DB=WormBase Gene ID /WP=CE14078 /TR=O18117 /GB=CAB03404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 92      4grp_high_8_8 > 38      6grp_total > 83      4grp_total > 42      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 73.2
(-3)
P 		165.3
(3)
P 		121.8
(0.2)
P 		145.3
(1.7)
P 		92
B 85.9
(-1.2)
A 		156
(3)
P 		155.8
(3)
P 		56.5
(-3)
A 		100
C 61.5
(-3)
P 		169
(3)
M 		121.4
(0.3)
M 		109.4
(-0.3)
A 		108
avr 73.5
(-3) 		163.4
(3) 		133
(1) 		103.7
(-1) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 699
1 2 3 4 5 6 range
A 104.3
(-3)
A 		116
(-2.9)
P 		113.9
(-2.9)
P 		683.1
(2.3)
P 		763.4
(3)
P 		244.6
(-1.7)
P 		659
B 111.4
(-2.9)
P 		108.5
(-2.9)
P 		97.4
(-3)
P 		696.8
(3)
P 		642.9
(2.5)
P 		244.9
(-1.5)
P 		599
C 122.7
(-2.9)
P 		136.7
(-2.7)
P 		105.9
(-3)
A 		665.8
(1.9)
P 		796.2
(3)
P 		142.2
(-2.7)
P 		690
avr 112.8
(-2.9) 		120.4
(-2.9) 		105.7
(-3) 		681.9
(2.5) 		734.2
(3) 		210.6
(-2) 		629
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 26.7
(-0.8)
P 		35.9
(3)
P 		31.8
(1.3)
P 		21.3
(-3)
P 		15
B 27.4
(0.5)
A 		38.5
(3)
P 		36.1
(2.5)
P 		12
(-3)
A 		27
C 20.4
(-2.6)
P 		48.6
(3)
M 		42.3
(1.7)
M 		18.5
(-3)
A 		30
avr 24.8
(-1.1) 		41
(3) 		36.7
(1.9) 		17.3
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 19.2
(-3)
A 		41.3
(-2.4)
P 		24.8
(-2.8)
P 		173.2
(1.4)
P 		230.3
(3)
P 		59.6
(-1.9)
P 		211
B 38.8
(-2.6)
P 		36.1
(-2.7)
P 		23.6
(-3)
P 		184.6
(1.1)
P 		261.2
(3)
P 		91.3
(-1.3)
P 		238
C 45.5
(-2.5)
P 		41.7
(-2.6)
P 		26.9
(-3)
A 		133.9
(-0.2)
P 		257.6
(3)
P 		47.6
(-2.5)
P 		231
avr 34.5
(-2.7) 		39.7
(-2.6) 		25.1
(-3) 		163.9
(0.7) 		249.7
(3) 		66.2
(-1.9) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13539
Sequence Type Exemplar sequence
Representative Public ID T23F1.5 NCBI
Target Description T23F1.5 /REP_DB=WormBase Gene ID /WP=CE14078 /TR=O18117 /GB=CAB03404.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074447(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074447 NCBI Caenorhabditis elegans T23F1.5 (T23F1.5) mRNA, complete cds. 11/11 None
SNAP00000033149 ENSEMBL cdna:SNAP chromosome:CEL140:V:15462076:15467005:-1 10/11 None
GENEFINDER00000033153 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15458546:15467005:-1 10/11 None
T23F1.5 ENSEMBL cdna:known chromosome:CEL140:V:15462063:15467010:-1 gene:T23F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15462088-15467005(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23F1.5
Entrez Gene 180041 Entrez gene
SwissProt O18117 EMBL-EBI
WormBase CE14078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03404 Hypothetical protein T23F1.5 [Caenorhabditis elegans] ref|NP_506848.1| T23F1.5 [Caenorhabditis elegans] 0.0
blast CAE56833 Hypothetical protein CBG24658 [Caenorhabditis briggsae] 0.0
blast CAB03407 Hypothetical protein T23F1.4 [Caenorhabditis elegans] ref|NP_506847.1| Seven TM Receptor family member (str-71) [Caenorhabditis elegans] 2.0E-79
blast CAE60481 Hypothetical protein CBG04095 [Caenorhabditis briggsae] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 5.6E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506848.1 1 1235-1257
T23F1.5 1 1235-1257
GENEFINDER00000033153 5 1278-1300,1327-1349,1364-1386,1421-1443,1453-1475
Sequence
Target Sequence 
>C. ELEGANS:179534_S_AT
ttggcgctgaggtcagtgctgctgacattggaatgccactggctcttaaatggagtatgg
ttccagagtcggacgcatatggaatgcacatacgcaactgcaaagtggtagatgcggtgg
gcaagatcgatcatactctaatagacgagcaggggtgctctgcggatcttcagatcatcg
atcatccccattatgacacctaccacgacactgcttcctctcacatgtgggctttcaagg
ttccagacatgtcgagcctccagatcaaatgtgatattctgatatgctcaaacatcaagt
cttccgttacgaacacgactagctgtgaggatattccttcgcctccattctgtgcagatg
ttgtgacgtctccaccaaattctatcctctcagatgcttcttcattcatcaagcatcgac
gtgcttcagtaccttctgaagtttccccagcgacgcaatcggtgagaacctcgatttgct
tgtcgaaaagctgcagaccagatttttcagaagaagtccgaatctgcgtcaacactcaat
tggcgactacttcgacaggattgtcattggcgttcttactttttgcaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCGCTGAGGTCAGTGCTGCTGA 409 707 3176 Antisense
GATCATCGATCATCCCCATTATGAC 622 417 3348 Antisense
GGGCTTTCAAGGTTCCAGACATGTC 403 491 3404 Antisense
GACATGTCGAGCCTCCAGATCAAAT 486 369 3421 Antisense
CTGTGAGGATATTCCTTCGCCTCCA 622 239 3498 Antisense
GATGTTGTGACGTCTCCACCAAATT 371 409 3532 Antisense
AAATTCTATCCTCTCAGATGCTTCT 566 115 3552 Antisense
TTTCCCCAGCGACGCAATCGGTGAG 522 667 3617 Antisense
AGAAGTCCGAATCTGCGTCAACACT 446 75 3687 Antisense
AACACTCAATTGGCGACTACTTCGA 687 135 3706 Antisense
TGGCGTTCTTACTTTTTGCAATTTC 164 545 3743 Antisense
Sequence Source Affymetrix Proprietary Database