[Home] | [Total List]

[179533_at]

Description C06B8.2 /REP_DB=WormBase Gene ID /WP=CE27663 /TR=O17576 /GB=CAB03409.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 60      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1
(-3)
A 		24
(2.3)
A 		27.2
(3)
A 		1
(-3)
A 		26
B 29.7
(3)
A 		4.1
(-2.4)
A 		1
(-3)
A 		2.3
(-2.7)
A 		29
C 1.4
(-3)
A 		1.8
(-2.9)
A 		21.6
(3)
A 		2.9
(-2.6)
A 		20
avr 10.7
(0.6) 		10
(0.3) 		16.6
(3) 		2.1
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 31.3
(-1.5)
A 		76
(0.9)
A 		114.7
(3)
P 		51.7
(-0.4)
A 		18.6
(-2.2)
A 		4.1
(-3)
A 		111
B 41.7
(-0.4)
A 		80.2
(3)
A 		76.3
(2.7)
A 		61.6
(1.3)
A 		47.6
(0.1)
A 		13.2
(-3)
A 		67
C 55.4
(1.8)
A 		65.3
(3)
A 		62.8
(2.7)
A 		17.4
(-3)
A 		26.5
(-1.9)
A 		31.8
(-1.2)
A 		48
avr 42.8
(-0.7) 		73.8
(2) 		84.6
(3) 		43.6
(-0.6) 		30.9
(-1.7) 		16.4
(-3) 		68
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-2.7)
A 		5.2
(1.4)
A 		7.1
(3)
A 		0.1
(-3)
A 		7
B 9.5
(3)
A 		1
(-2.5)
A 		0.2
(-3)
A 		0.5
(-2.8)
A 		9
C 0.5
(-3)
A 		0.5
(-3)
A 		7.5
(3)
A 		0.5
(-3)
A 		7
avr 3.5
(1.1) 		2.2
(-0.6) 		4.9
(3) 		0.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.8
(-1.9)
A 		27
(3)
A 		25
(2.5)
P 		13.1
(-0.2)
A 		5.6
(-1.9)
A 		1
(-3)
A 		26
B 14.5
(-0.4)
A 		26.7
(3)
A 		18.5
(0.7)
A 		16.3
(0.1)
A 		19.4
(1)
A 		4.9
(-3)
A 		22
C 20.5
(3)
A 		19.9
(2.8)
A 		16
(1.4)
A 		3.5
(-3)
A 		8.6
(-1.2)
A 		10.6
(-0.5)
A 		17
avr 13.6
(-0.4) 		24.5
(3) 		19.8
(1.5) 		11
(-1.3) 		11.2
(-1.2) 		5.5
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14091
Sequence Type Exemplar sequence
Representative Public ID C06B8.2 NCBI
Target Description C06B8.2 /REP_DB=WormBase Gene ID /WP=CE27663 /TR=O17576 /GB=CAB03409.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074451(9), NM_074452(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074451 NCBI Caenorhabditis elegans C06B8.2a (C06B8.2) mRNA, complete cds. 9/11 None
NM_074452 NCBI Caenorhabditis elegans C06B8.2b (C06B8.2) mRNA, complete cds. 11/11 None
SNAP00000044317 ENSEMBL cdna:SNAP chromosome:CEL140:V:15479127:15480365:-1 9/11 None
GENEFINDER00000044329 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15479298:15480924:-1 9/11 None
C06B8.2b ENSEMBL cdna:known chromosome:CEL140:V:15478705:15481151:-1 gene:C06B8.2 11/11 None
C06B8.2a ENSEMBL cdna:known chromosome:CEL140:V:15478816:15480924:-1 gene:C06B8.2 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002255 2/11 Cross Hyb Matching Probes None
GENEFINDER00000002259 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16089714-16090800(+) 92.7 92.7
chrV:15479023-15480365(-) 100.0 100.0
Public Domain and Genome References
Ensembl C06B8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03854 Hypothetical protein C06B8.2a [Caenorhabditis elegans] emb|CAB03409.4| Hypothetical protein C06B8.2a [Caenorhabditis elegans] ref|NP_506852.2| C06B8.2a [Caenorhabditis elegans] 0.0
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506852.2 1 7-24
NP_506853.2 1 7-24
C06B8.2b 1 7-24
C06B8.2a 1 7-24
GENEFINDER00000044329 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:179533_AT
acttgacatcgagaagaggccaactgtcaaagttcggaaattcgattattccaagtatcc
gaattatgtagaaaactggatggaatatcgtttcaaagcgttgattctcgctgaagcgat
tcgggattatgcgaatgtttggtggattgatgcccatacaaaatggattcatccaaattc
attggatacagtttatggagatctggcagaatgcgccaacgatgttaactgtacgaagaa
ctcctcaattcaaacatttatcaactcaacgcacagcaattacgcagttctaacaaatgg
acttcttgactattttcccacgtttgacacagatgttctgaaaacaaacgaaaaaggcct
tcaagtatctgcaatgctggtctatttggctcgaactccattcactttggagattttgaa
atggcacaccctttgcgcattagaagaaaaatgtatgaacccgccggcagcgaaactgaa
gtgcgacatcattcccacctggaattcttatgcaggatgttttcggtacgatcagtcatc
aatcaatattttgctgttaaatcaatttcgagatcacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGACATCGAGAAGAGGCCAACT 245 101 180 Antisense
GAAGAGGCCAACTGTCAAAGTTCGG 327 335 192 Antisense
AAGCGTTGATTCTCGCTGAAGCGAT 666 149 275 Antisense
GCTGAAGCGATTCGGGATTATGCGA 666 293 289 Antisense
AATGGATTCATCCAAATTCATTGGA 5 163 341 Antisense
CCAACGATGTTAACTGTACGAAGAA 639 275 395 Antisense
CTGTACGAAGAACTCCTCAATTCAA 557 239 408 Antisense
CACAGCAATTACGCAGTTCTAACAA 699 185 451 Antisense
GTTCTAACAAATGGACTTCTTGACT 704 443 466 Antisense
AGGATGTTTTCGGTACGATCAGTCA 60 51 693 Antisense
GTTAAATCAATTTCGAGATCACAAC 565 445 735 Antisense
Sequence Source Affymetrix Proprietary Database