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[179532_at]

Description F31E9.5 /REP_DB=WormBase Gene ID /WP=CE15939 /TR=O45429 /GB=CAB07202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 42      6grp_cgc > 81      6grp_cgc_sub > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.2
(-3)
A 		38
(3)
A 		25.5
(0.7)
A 		10.9
(-2)
A 		33
B 16.7
(3)
A 		6.5
(-1.3)
A 		6.1
(-1.4)
A 		2.4
(-3)
A 		14
C 4.7
(-3)
A 		14.1
(1.4)
A 		9.1
(-0.9)
A 		17.5
(3)
A 		13
avr 8.9
(-3) 		19.5
(3) 		13.6
(-0.3) 		10.3
(-2.2) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.5
(-2.3)
A 		3.2
(-2.6)
A 		23.9
(3)
P 		1.9
(-3)
A 		4.8
(-2.2)
A 		4.4
(-2.3)
A 		22
B 20.3
(3)
A 		1.8
(-3)
A 		2.7
(-2.7)
A 		2.4
(-2.8)
A 		1.9
(-3)
A 		2.8
(-2.7)
A 		19
C 1.8
(-3)
A 		26
(3)
A 		13.6
(-0.1)
A 		9.9
(-1)
A 		7.5
(-1.6)
A 		2.3
(-2.9)
A 		24
avr 8.9
(0.4) 		10.3
(1.2) 		13.4
(3) 		4.7
(-2.1) 		4.7
(-2.1) 		3.2
(-3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-2.7)
A 		8.3
(3)
A 		6.7
(1.6)
A 		1.6
(-3)
A 		7
B 5.3
(3)
A 		1.6
(-1.6)
A 		1.4
(-1.9)
A 		0.5
(-3)
A 		5
C 1.5
(-3)
A 		4.1
(3)
A 		3.2
(0.9)
A 		2.9
(0.2)
A 		3
avr 2.9
(-0.6) 		4.7
(3) 		3.8
(1.2) 		1.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		1.1
(-2.2)
A 		5.2
(3)
P 		0.5
(-3)
A 		1.4
(-1.9)
A 		1.1
(-2.2)
A 		5
B 7.1
(3)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		0.8
(-2.8)
A 		1
(-2.6)
A 		7
C 0.7
(-3)
A 		7.9
(3)
A 		3.5
(-0.7)
A 		2
(-1.9)
A 		2.4
(-1.6)
A 		0.8
(-2.9)
A 		7
avr 2.9
(2.2) 		3.2
(3) 		3.1
(2.7) 		1
(-3) 		1.5
(-1.6) 		1
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13568
Sequence Type Exemplar sequence
Representative Public ID F31E9.5 NCBI
Target Description F31E9.5 /REP_DB=WormBase Gene ID /WP=CE15939 /TR=O45429 /GB=CAB07202.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074982(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074982 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-58) (srz-58) mRNA, complete cds. 11/11 None
GENEFINDER00000027119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17317790:17322092:1 11/11 None
F31E9.5 ENSEMBL cdna:known chromosome:CEL140:V:17320724:17322092:1 gene:F31E9.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17320723-17322092(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-58
Ensembl F31E9.5
Entrez Gene 185161 Entrez gene
SwissProt O45429 EMBL-EBI
WormBase CE15939 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07202 Hypothetical protein F31E9.5 [Caenorhabditis elegans] ref|NP_507383.1| Serpentine Receptor, class Z family member (srz-58) [Caenorhabditis elegans] 1.0E-159
blast CAB07202 Hypothetical protein F31E9.5 [Caenorhabditis elegans] ref|NP_507383.1| Serpentine Receptor, class Z family member (srz-58) [Caenorhabditis elegans] 1.0E-135
blast T19393 hypothetical protein C18D4.7 - Caenorhabditis elegans 1.0E-88
blast T19393 hypothetical protein C18D4.7 - Caenorhabditis elegans 2.0E-68
blast CAH60750 Hypothetical protein C18D4.5 [Caenorhabditis elegans] ref|NP_001023667.1| Serpentine Receptor, class Z family member (srz-25) [Caenorhabditis elegans] 5.0E-59
blast AAB92022 Serpentine receptor, class z protein 60 [Caenorhabditis elegans] ref|NP_500343.2| Serpentine Receptor, class Z family member (srz-60) [Caenorhabditis elegans] 2.0E-44
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.0E-47
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 5.9E-7
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507383.1 7 22-44,72-94,101-123,158-180,193-215,235-257,264-286
F31E9.5 7 22-44,72-94,101-123,158-180,193-215,235-257,264-286
GENEFINDER00000027119 11 72-91,106-128,141-163,178-200,202-223,238-260,267-289,324-346,359-381,401-423,430-452
Sequence
Target Sequence 
>C. ELEGANS:179532_AT
catcataacccaagttttccacctgataacattaattctgtccctggaaagattcattgt
gtatttcttcccagattctgaaaaatctgtaaacaccgtgcaaaaagtcgtttttcaaca
tatttatatagtttacggcgcttttattggcaaggacgccggtttgctgcttttcttgtt
tgcttggaaaaagttagacggggaagcgattttgttaatatattcgattttgtatatagt
gatcaacagctgtgtgattttgtctggcgtactgtacattccaataatgatcagtgtacg
gaaattatcaaatttagcttcagctcaggagaatacgccgcaaaattacatatttttgca
gactatcgctgtgattgtgttcaagtttattggattattcccagttatacttcttgcata
tgaatttactaaagaagtagttatgctttgtattgttttaatagcattcctagatttagt
gggaacacctttgatgatccaattgtcgtatttgggatgtaacaagcgaaatgttaaggt
tatgttgtcttcatttgatttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATAACCCAAGTTTTCCACCTG 169 213 366 Antisense
GATAACATTAATTCTGTCCCTGGAA 294 421 390 Antisense
GTCCCTGGAAAGATTCATTGTGTAT 617 475 405 Antisense
GACGGGGAAGCGATTTTGTTAATAT 461 375 562 Antisense
GTATATAGTGATCAACAGCTGTGTG 581 453 597 Antisense
AGCTGTGTGATTTTGTCTGGCGTAC 319 81 613 Antisense
GTCTGGCGTACTGTACATTCCAATA 126 473 627 Antisense
TATTCCCAGTTATACTTCTTGCATA 593 661 761 Antisense
AGTAGTTATGCTTTGTATTGTTTTA 541 61 801 Antisense
TAATAGCATTCCTAGATTTAGTGGG 512 633 824 Antisense
GGTTATGTTGTCTTCATTTGATTTG 61 507 903 Antisense
Sequence Source Affymetrix Proprietary Database