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[179531_at]

Description R10E4.7 /REP_DB=WormBase Gene ID /WP=CE03561 /TR=Q21904 /GB=CAA90768.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 28      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.1
(2.6)
A 		11.3
(3)
A 		8.5
(-3)
A 		9.7
(-0.4)
A 		3
B 3.3
(-3)
A 		6.9
(2.7)
A 		7
(2.8)
A 		7.1
(3)
A 		4
C 11.4
(1.4)
A 		12
(1.8)
A 		3.5
(-3)
A 		14.2
(3)
A 		11
avr 8.6
(0.4) 		10.1
(2.7) 		6.3
(-3) 		10.3
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 14.5
(-2.5)
A 		4
(-3)
A 		20.6
(-2.3)
A 		8.5
(-2.8)
A 		38.8
(-1.5)
A 		143.3
(3)
P 		139
B 8
(-2.9)
A 		7
(-2.9)
A 		5.2
(-3)
A 		26.6
(-2.1)
A 		144.4
(2.8)
P 		148.1
(3)
P 		143
C 2.2
(-3)
A 		6.8
(-2.8)
A 		3
(-3)
A 		27.2
(-2.1)
A 		113.3
(1.1)
P 		165.8
(3)
P 		164
avr 8.2
(-2.9) 		5.9
(-3) 		9.6
(-2.8) 		20.8
(-2.4) 		98.8
(0.8) 		152.4
(3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 4.1
(3)
A 		2.4
(-0.8)
A 		2.2
(-1.2)
A 		1.4
(-3)
A 		3
B 1.1
(-3)
A 		1.7
(3)
A 		1.6
(2)
A 		1.5
(1)
A 		1
C 3.8
(3)
A 		3.4
(2.1)
A 		1.2
(-3)
A 		2.4
(-0.2)
A 		3
avr 3
(3) 		2.5
(0.7) 		1.7
(-3) 		1.8
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 2.7
(-2.8)
A 		1.4
(-3)
A 		4.5
(-2.4)
A 		2.2
(-2.9)
A 		11.7
(-1.2)
A 		34.9
(3)
P 		34
B 2.8
(-2.8)
A 		2.3
(-2.9)
A 		1.3
(-3)
A 		7
(-2.4)
A 		58.7
(3)
P 		55.2
(2.6)
P 		57
C 0.8
(-3)
A 		2.1
(-2.9)
A 		0.8
(-3)
A 		5.5
(-2.5)
A 		36.6
(0.9)
P 		55.5
(3)
P 		55
avr 2.1
(-3) 		1.9
(-3) 		2.2
(-3) 		4.9
(-2.6) 		35.7
(1.4) 		48.5
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7268
Sequence Type Exemplar sequence
Representative Public ID R10E4.7 NCBI
Target Description R10E4.7 /REP_DB=WormBase Gene ID /WP=CE03561 /TR=Q21904 /GB=CAA90768.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065460 NCBI Caenorhabditis elegans R10E4.7 (R10E4.7) mRNA, complete cds. 11/11 None
GENEFINDER00000016407 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4293429:4296477:1 9/11 None
SNAP00000016399 ENSEMBL cdna:SNAP chromosome:CEL140:III:4293582:4296477:1 10/11 None
R10E4.7 ENSEMBL cdna:known chromosome:CEL140:III:4295300:4296477:1 gene:R10E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4295299-4296477(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R10E4.7
Entrez Gene 187772 Entrez gene
SwissProt Q21904 EMBL-EBI
WormBase CE03561 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90767 Hypothetical protein R10E4.6 [Caenorhabditis elegans] ref|NP_497860.1| R10E4.6 [Caenorhabditis elegans] 0.0
blast CAA90767 Hypothetical protein R10E4.6 [Caenorhabditis elegans] ref|NP_497860.1| R10E4.6 [Caenorhabditis elegans] 1.0E-112
blast CAA90768 Hypothetical protein R10E4.7 [Caenorhabditis elegans] ref|NP_497861.1| R10E4.7 [Caenorhabditis elegans] 1.0E-109
blast CAA90768 Hypothetical protein R10E4.7 [Caenorhabditis elegans] ref|NP_497861.1| R10E4.7 [Caenorhabditis elegans] 1.0E-102
blast CAA90768 Hypothetical protein R10E4.7 [Caenorhabditis elegans] ref|NP_497861.1| R10E4.7 [Caenorhabditis elegans] 2.0E-93
blast CAE66918 Hypothetical protein CBG12306 [Caenorhabditis briggsae] 2.0E-78
blast CAE66918 Hypothetical protein CBG12306 [Caenorhabditis briggsae] 3.0E-73
blast CAE66918 Hypothetical protein CBG12306 [Caenorhabditis briggsae] 1.0E-64
Sequence
Target Sequence 
>C. ELEGANS:179531_AT
cagatcgttgattcgagttcgactgacaagattctttcccagtgatcgatatataaaaaa
tcgatgttcaggagctgatggtgttctaattgactttgaaaagaaggaggataaagtaga
cgattataaactttcaagttttcatcgactgaaaaacagtaaattctcacttccaaaact
tctcgtcgacccagtcaccaccaactctaaccaatggattccccgattaatcgaagaaaa
gtcagtggacggagttgcgatgcgaaacttcaccgatgacgtcatctcgctggacaacga
gatatttacaatgatttgggatacacgggagcaacgaataactcattcaattatcagtta
tcatcgaattaatgattgtgatattatgtggaatagtagtattcggacagctgtacaaga
ctctttggaacacgatattcaaccattggcggcgagaactctcagatttagggactatga
aacagccgttcaagaattcgagattcttcgtcagataggattcaccggagccgtcattcg
caacccgaatctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGATCGTTGATTCGAGTTCGACTG 639 201 21 Antisense
GACAAGATTCTTTCCCAGTGATCGA 497 365 45 Antisense
GGAGCTGATGGTGTTCTAATTGACT 682 521 91 Antisense
GTCACCACCAACTCTAACCAATGGA 357 463 214 Antisense
AACCAATGGATTCCCCGATTAATCG 354 147 229 Antisense
GTCAGTGGACGGAGTTGCGATGCGA 308 467 261 Antisense
TCGGACAGCTGTACAAGACTCTTTG 640 605 423 Antisense
GGAACACGATATTCAACCATTGGCG 53 529 447 Antisense
CAACCATTGGCGGCGAGAACTCTCA 390 185 460 Antisense
ATAGGATTCACCGGAGCCGTCATTC 43 23 535 Antisense
CCGTCATTCGCAACCCGAATCTAAT 180 265 551 Antisense
Sequence Source Affymetrix Proprietary Database