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[179530_at]

Description F56H9.1 /REP_DB=WormBase Gene ID /WP=CE05971 /TR=Q20908 /GB=CAA98949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 43      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 66.4
(0.9)
A 		73
(3)
A 		55.5
(-2.7)
A 		54.5
(-3)
A 		19
B 45.1
(-1.7)
A 		109.5
(3)
A 		35.8
(-2.4)
A 		27.5
(-3)
A 		82
C 75
(-3)
A 		91.2
(-0.1)
A 		84.7
(-1.3)
A 		108.7
(3)
A 		34
avr 62.2
(-2.4) 		91.2
(3) 		58.7
(-3) 		63.6
(-2.1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 77.2
(-0.5)
A 		154
(3)
A 		67.2
(-1)
A 		41.9
(-2.1)
A 		22.5
(-3)
A 		34.8
(-2.4)
A 		132
B 76.9
(1.2)
A 		107.8
(3)
A 		65.1
(0.5)
A 		24.9
(-1.8)
A 		46.2
(-0.6)
A 		3.9
(-3)
A 		104
C 79.5
(2.8)
A 		82.5
(3)
A 		13.2
(-2.6)
A 		45.8
(0.1)
A 		46.6
(0.1)
A 		7.6
(-3)
A 		75
avr 77.9
(0.8) 		114.8
(3) 		48.5
(-1) 		37.5
(-1.7) 		38.4
(-1.6) 		15.4
(-3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 24.2
(3)
A 		15.9
(-0.1)
A 		14.5
(-0.6)
A 		8
(-3)
A 		16
B 14.4
(-0.6)
A 		27.1
(3)
A 		8.3
(-2.3)
A 		5.9
(-3)
A 		21
C 24.8
(0.5)
A 		26.2
(1.2)
A 		29.5
(3)
A 		18.3
(-3)
A 		11
avr 21.1
(2) 		23.1
(3) 		17.4
(0.2) 		10.7
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 14.2
(-2.1)
A 		54.8
(3)
A 		14.6
(-2)
A 		10.6
(-2.5)
A 		6.8
(-3)
A 		8.5
(-2.8)
A 		48
B 26.7
(1.4)
A 		35.9
(3)
A 		15.8
(-0.5)
A 		6.6
(-2.1)
A 		18.8
(0)
A 		1.5
(-3)
A 		34
C 29.5
(3)
A 		25.2
(2)
A 		3.3
(-2.8)
A 		9.2
(-1.5)
A 		15.1
(-0.2)
A 		2.5
(-3)
A 		27
avr 23.5
(0.4) 		38.6
(3) 		11.2
(-1.8) 		8.8
(-2.2) 		13.6
(-1.4) 		4.2
(-3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13403
Sequence Type Exemplar sequence
Representative Public ID F56H9.1 NCBI
Target Description F56H9.1 /REP_DB=WormBase Gene ID /WP=CE05971 /TR=Q20908 /GB=CAA98949.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028815 NCBI Caenorhabditis elegans F56H9.6 (F56H9.6) mRNA, complete cds. 11/11 None
SNAP00000036162 ENSEMBL cdna:SNAP chromosome:CEL140:V:12631546:12632432:-1 11/11 None
GENEFINDER00000036168 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12631546:12632432:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12631545-12636227(-) 71.64 100.0
Public Domain and Genome References
Gene Title
Entrez Gene 3565248 Entrez gene
SwissProt Q564Z3 EMBL-EBI
WormBase CE38378 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79195 Hypothetical protein F56H9.6 [Caenorhabditis elegans] ref|NP_001023986.1| F56H9.6 [Caenorhabditis elegans] 3.0E-69
blast CAE63950 Hypothetical protein CBG08532 [Caenorhabditis briggsae] 8.0E-43
blast AAB37615 Hypothetical protein B0554.2 [Caenorhabditis elegans] ref|NP_503200.1| B0554.2 [Caenorhabditis elegans] 3.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR004024 EMBL-EBI Protein of unknown function DUF225 5.0E-66
Sequence
Target Sequence 
>C. ELEGANS:179530_AT
accgaagcaacaaccactactgaaattaccacaacaactgaagaagttacaactacaact
gaacctgtaacaactaccacgacaccaacaacaacatcaacgacttccacaacaaccaca
acaactccaactactactacaacaacaacgccaaccaccacgacctcgaccacctcaact
acgacgacaaccaccccaacaaccaccacctcaactactaccaccacaaccacgaccaca
actacagcaactccaaccactacgactacaactatgcctccgtgcaatccaaacgctgtt
agcttgggaatgggagatgccaacaatccacagattttcatcgatgtcacttataacaac
tacctttcgaccaccgatccagtaactggaatcgtcacatcaacaatgactgtaacatgt
agtgcactcaatggatacaacacatacatgctattcaatggaggtcaaggtggtccagca
gataatcaaaatctaccgcaaaccatatcaatcacattagtatgtacatcggatacaatg
gtctggaattacgaggtaacaatcaatggtgttacatacactcgagcagtgtcgtccgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGAAGCAACAACCACTACTGAAA 645 89 1696 Antisense
CTGAACCTGTAACAACTACCACGAC 46 237 1754 Antisense
CTACGACTACAACTATGCCTCCGTG 707 223 1955 Antisense
CCTCCGTGCAATCCAAACGCTGTTA 442 267 1972 Antisense
ATGGGAGATGCCAACAATCCACAGA 302 51 2005 Antisense
GTCACTTATAACAACTACCTTTCGA 319 463 2041 Antisense
TTCGACCACCGATCCAGTAACTGGA 210 695 2061 Antisense
GTAACTGGAATCGTCACATCAACAA 138 461 2077 Antisense
GGAGGTCAAGGTGGTCCAGCAGATA 64 517 2155 Antisense
ATCTACCGCAAACCATATCAATCAC 199 31 2186 Antisense
ATACACTCGAGCAGTGTCGTCCGTT 407 23 2271 Antisense
Sequence Source Affymetrix Proprietary Database