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[179529_at]

Description C04H5.1 /REP_DB=WormBase Gene ID /WP=CE15587 /TR=O45241 /GB=CAB03840.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 44      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 12.6
(3)
A 		8.7
(0.2)
A 		10.1
(1.2)
A 		4.1
(-3)
A 		9
B 4.9
(-3)
A 		7.5
(-1.9)
A 		5.3
(-2.8)
A 		18.9
(3)
A 		14
C 26.7
(0.9)
A 		37.2
(3)
A 		7.4
(-3)
A 		7.5
(-3)
A 		30
avr 14.7
(1.2) 		17.8
(3) 		7.6
(-3) 		10.2
(-1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 24.7
(3)
A 		4.4
(-2.9)
A 		5.8
(-2.5)
A 		4.6
(-2.8)
A 		4
(-3)
A 		11
(-1)
A 		21
B 5.7
(-2.4)
A 		15.8
(3)
A 		13.9
(2)
A 		9.6
(-0.3)
A 		4.6
(-3)
A 		9
(-0.6)
A 		11
C 3.6
(-3)
A 		9.3
(3)
A 		5.8
(-0.7)
A 		8.1
(1.7)
A 		6.2
(-0.3)
A 		6.2
(-0.3)
A 		6
avr 11.3
(3) 		9.8
(1.6) 		8.5
(0.4) 		7.4
(-0.7) 		4.9
(-3) 		8.7
(0.6) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.6
(3)
A 		1.9
(-1.1)
A 		2.6
(0)
A 		0.6
(-3)
A 		4
B 1.6
(-2.1)
A 		1.8
(-1.7)
A 		1.2
(-3)
A 		4
(3)
A 		3
C 8.8
(1.8)
A 		10.7
(3)
A 		2.6
(-2.2)
A 		1.3
(-3)
A 		9
avr 5
(3) 		4.8
(2.6) 		2.1
(-2.8) 		2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.6
(3)
A 		1.6
(-2.3)
A 		1.3
(-2.8)
A 		1.2
(-3)
A 		1.2
(-3)
A 		2.7
(-0.4)
A 		3
B 2
(-2.8)
A 		5.2
(3)
A 		3.4
(-0.3)
A 		2.5
(-1.9)
A 		1.9
(-3)
A 		3.4
(-0.3)
A 		3
C 1.3
(-3)
A 		2.9
(3)
A 		1.5
(-2.3)
A 		1.6
(-1.9)
A 		2
(-0.4)
A 		2.1
(0)
A 		2
avr 2.6
(0.6) 		3.2
(3) 		2.1
(-1.4) 		1.8
(-2.6) 		1.7
(-3) 		2.7
(1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3128
Sequence Type Exemplar sequence
Representative Public ID C04H5.1 NCBI
Target Description C04H5.1 /REP_DB=WormBase Gene ID /WP=CE15587 /TR=O45241 /GB=CAB03840.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064620(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064620 NCBI Caenorhabditis elegans C04H5.1 (C04H5.1) mRNA, complete cds. 11/11 None
SNAP00000026413 ENSEMBL cdna:SNAP chromosome:CEL140:II:14534191:14535006:1 11/11 None
GENEFINDER00000026424 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14534191:14535006:1 11/11 None
C04H5.1 ENSEMBL cdna:known chromosome:CEL140:II:14534191:14535006:1 gene:C04H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14534187-14535003(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04H5.1
Entrez Gene 182240 Entrez gene
SwissProt O45241 EMBL-EBI
WormBase CE15587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03840 Hypothetical protein C04H5.1 [Caenorhabditis elegans] ref|NP_497021.1| C04H5.1 [Caenorhabditis elegans] sp|O45241|U315_CAEEL Hypothetical UPF0315 protein C04H5.1 1.0E-66
blast CAE73429 Hypothetical protein CBG20872 [Caenorhabditis briggsae] 3.0E-48
blast EAA11274 ENSANGP00000002571 [Anopheles gambiae str. PEST] ref|XP_316602.1| ENSANGP00000002571 [Anopheles gambiae str. PEST] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR005651 EMBL-EBI Protein of unknown function DUF343 3.0E-68
Sequence
Target Sequence 
>C. ELEGANS:179529_AT
tttgtgcacaacttcatgtcttcccgttttctgaaaaacgtcaccgttggatatccgctt
aatttggttgttaagcagtttgtcgagaaggatatcgaattcgatagggataacaccatc
gtcatgcttgacaggatccaatacgaagcgctcatcgtcgccgccgccgcagtcaatcaa
tccgaccggattccacgtgaaaaaccggaaaaatgggatgagctgaccgatgagcagctc
agagtgttccatcatttgctcatgaacattgacgtcatcgacggagaactcatctgcccg
gaaaccaagacggtgtttccgattcgtgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTGCACAACTTCATGTCTTCCC 190 667 22 Antisense
TCATGTCTTCCCGTTTTCTGAAAAA 357 623 35 Antisense
AACGTCACCGTTGGATATCCGCTTA 378 143 58 Antisense
GGATAACACCATCGTCATGCTTGAC 348 511 129 Antisense
GACAGGATCCAATACGAAGCGCTCA 409 369 151 Antisense
CCGCAGTCAATCAATCCGACCGGAT 349 261 188 Antisense
CAATCCGACCGGATTCCACGTGAAA 151 1 199 Antisense
GCAGCTCAGAGTGTTCCATCATTTG 39 315 255 Antisense
TCGACGGAGAACTCATCTGCCCGGA 60 603 299 Antisense
ATCTGCCCGGAAACCAAGACGGTGT 633 1 313 Antisense
GACGGTGTTTCCGATTCGTGATGGA 519 377 330 Antisense
Sequence Source Affymetrix Proprietary Database