[Home] | [Total List]

[179528_at]

Description ZK856.7 /REP_DB=WormBase Gene ID /WP=CE06664 /TR=Q23642 /GB=CAA94855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 47      6grp_total > 53      4grp_total > 04      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1525
1 2 3 4 range
A 2437.4
(2.5)
P 		1978
(-3)
P 		2159.7
(-0.8)
P 		2479.9
(3)
P 		502
B 2604.7
(-1.2)
P 		2205
(-3)
P 		2308.8
(-2.5)
P 		3503.3
(3)
P 		1298
C 2404.9
(-3)
P 		2554.6
(-2.2)
P 		2661.2
(-1.6)
P 		3496.7
(3)
P 		1092
avr 2482.3
(-1.4) 		2245.9
(-3) 		2376.6
(-2.1) 		3160
(3) 		914

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2844
1 2 3 4 5 6 range
A 2333.2
(-3)
P 		3280.7
(-1)
P 		5177.3
(3)
P 		4092.1
(0.7)
P 		2929.9
(-1.7)
P 		2649.1
(-2.3)
P 		2844
B 3299.6
(-3)
P 		4171.5
(2.2)
P 		4299.1
(3)
P 		3499.7
(-1.8)
P 		3486
(-1.9)
P 		3711.8
(-0.5)
P 		1000
C 3475.9
(0.3)
P 		3863.6
(3)
P 		3192.5
(-1.6)
P 		2994.2
(-3)
P 		3520
(0.6)
P 		3629
(1.4)
P 		869
avr 3036.2
(-3) 		3771.9
(0.7) 		4223
(3) 		3528.7
(-0.5) 		3312
(-1.6) 		3330
(-1.5) 		1187
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 565
1 2 3 4 range
A 887.5
(3)
P 		429.4
(-2.2)
P 		564.6
(-0.7)
P 		363
(-3)
P 		525
B 830.6
(3)
P 		544.6
(-2.8)
P 		535
(-3)
P 		746.6
(1.3)
P 		296
C 796.1
(0.7)
P 		734.5
(-0.4)
P 		927.5
(3)
P 		589.6
(-3)
P 		338
avr 838.1
(3) 		569.5
(-2.9) 		675.7
(-0.6) 		566.4
(-3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 986
1 2 3 4 5 6 range
A 430.1
(-3)
P 		1166.8
(3)
P 		1127.5
(2.7)
P 		1037.8
(1.9)
P 		884.1
(0.7)
P 		645
(-1.2)
P 		737
B 1148.1
(-0.3)
P 		1388.5
(2.7)
P 		1043.9
(-1.6)
P 		926.9
(-3)
P 		1416.3
(3)
P 		1384.1
(2.6)
P 		489
C 1288.4
(3)
P 		1178.9
(2)
P 		812.5
(-1.2)
P 		602.1
(-3)
P 		1139
(1.7)
P 		1214.8
(2.4)
P 		686
avr 955.5
(-1.5) 		1244.7
(3) 		994.6
(-0.9) 		855.6
(-3) 		1146.5
(1.5) 		1081.3
(0.5) 		389
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11451
Sequence Type Exemplar sequence
Representative Public ID ZK856.7 NCBI
Target Description ZK856.7 /REP_DB=WormBase Gene ID /WP=CE06664 /TR=Q23642 /GB=CAA94855.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073221(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073221 NCBI Caenorhabditis elegans ZK856.7 (ZK856.7) mRNA, complete cds. 11/11 None
SNAP00000036949 ENSEMBL cdna:SNAP chromosome:CEL140:V:10204679:10205090:1 11/11 None
GENEFINDER00000036977 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10204679:10205090:1 11/11 None
ZK856.7 ENSEMBL cdna:known chromosome:CEL140:V:10204678:10205188:1 gene:ZK856.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10204678-10205090(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK856.7
Entrez Gene 179416 Entrez gene
SwissProt Q23642 EMBL-EBI
WormBase CE06664 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94855 Hypothetical protein ZK856.7 [Caenorhabditis elegans] ref|NP_505622.1| ZK856.7 [Caenorhabditis elegans] 5.0E-65
blast CAE64753 Hypothetical protein CBG09543 [Caenorhabditis briggsae] 1.0E-61
blast AAR28033 immunogenic protein 3 [Brugia malayi] 9.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505622.1 1 4-23
ZK856.7 1 4-23
SNAP00000036949 1 4-23
GENEFINDER00000036977 1 4-23
Sequence
Target Sequence 
>C. ELEGANS:179528_AT
gcgtgtcgcagttattcttctgttctttttatctgtcgctctcgcatgtgacatcattgt
tcatttgaaatcggacacagacaagaaattcagcggacaaattgttgccagcaatggaaa
gaaatctgaaagatggagctatttgaagaagcttcagaagaacaccttccaacagaaagc
cgatgaatgtggactcaaggattgggagattactacttgggatgatgctggaaagccagt
tgctaccgtaaaagtcactttggatggaattggaagagtcacttacaaggttggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTGTCGCAGTTATTCTTCTGTTC 504 291 15 Antisense
TTCTTCTGTTCTTTTTATCTGTCGC 611 689 29 Antisense
TCGCTCTCGCATGTGACATCATTGT 440 599 50 Antisense
GTTCATTTGAAATCGGACACAGACA 99 445 73 Antisense
TCAGCGGACAAATTGTTGCCAGCAA 410 625 104 Antisense
GAAGCTTCAGAAGAACACCTTCCAA 27 343 162 Antisense
GAACACCTTCCAACAGAAAGCCGAT 63 353 174 Antisense
GGAGATTACTACTTGGGATGATGCT 572 517 219 Antisense
GCTGGAAAGCCAGTTGCTACCGTAA 456 293 241 Antisense
GTTGCTACCGTAAAAGTCACTTTGG 111 433 253 Antisense
GGAAGAGTCACTTACAAGGTTGGAG 359 527 286 Antisense
Sequence Source Affymetrix Proprietary Database