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[179527_at]

Description Y6E2A.1 /REP_DB=WormBase Gene ID /WP=CE16578 /TR=O45971 /GB=CAA15965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 10      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 10.8
(-2.3)
A 		31.6
(0.1)
A 		4.7
(-3)
A 		56.7
(3)
A 		52
B 2
(-2.9)
A 		2
(-2.9)
A 		1.7
(-3)
A 		29.1
(3)
A 		27
C 7.2
(-2)
A 		3.7
(-3)
A 		21.5
(2.1)
A 		24.5
(3)
A 		21
avr 6.7
(-3) 		12.4
(-1.9) 		9.3
(-2.5) 		36.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 2.2
(-1.5)
A 		1.4
(-3)
A 		4.6
(3)
A 		1.4
(-3)
A 		2.3
(-1.3)
A 		1.6
(-2.6)
A 		3
B 24
(3)
A 		14.7
(0.5)
A 		20.9
(2.2)
A 		3.6
(-2.6)
A 		3.2
(-2.7)
A 		2.1
(-3)
A 		22
C 3.4
(-2)
A 		4.3
(-1.7)
A 		3.9
(-1.8)
A 		3.3
(-2.1)
A 		1
(-3)
A 		15.8
(3)
A 		15
avr 9.9
(3) 		6.8
(0.6) 		9.8
(2.9) 		2.8
(-2.5) 		2.2
(-3) 		6.5
(0.4) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 3.9
(-0.7)
A 		6.9
(1.8)
A 		1.2
(-3)
A 		8.3
(3)
A 		7
B 0.6
(-2.8)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		6.2
(3)
A 		6
C 2.4
(-1.8)
A 		1.1
(-3)
A 		7.5
(3)
A 		4.1
(-0.2)
A 		6
avr 2.3
(-3) 		2.8
(-2.2) 		3
(-1.9) 		6.2
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.5
(-2)
A 		1
(3)
A 		0.4
(-3)
A 		0.7
(-0)
A 		0.4
(-3)
A 		1
B 8.3
(3)
A 		4.9
(0.3)
A 		5.1
(0.4)
A 		1
(-2.8)
A 		1.3
(-2.6)
A 		0.8
(-3)
A 		8
C 1.3
(-1.8)
A 		1.3
(-1.8)
A 		1
(-2.2)
A 		0.7
(-2.5)
A 		0.3
(-3)
A 		5.3
(3)
A 		5
avr 3.3
(3) 		2.2
(0.5) 		2.4
(0.9) 		0.7
(-3) 		0.8
(-2.8) 		2.2
(0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179527_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14290
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.1 NCBI
Target Description Y6E2A.1 /REP_DB=WormBase Gene ID /WP=CE16578 /TR=O45971 /GB=CAA15965.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074506(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074506 NCBI Caenorhabditis elegans Y6E2A.1 (Y6E2A.1) mRNA, complete cds. 11/11 None
SNAP00000013589 ENSEMBL cdna:SNAP chromosome:CEL140:V:15712158:15713617:-1 11/11 None
GENEFINDER00000013602 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15712158:15712740:-1 11/11 None
Y6E2A.1 ENSEMBL cdna:known chromosome:CEL140:V:15712162:15713085:-1 gene:Y6E2A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15712161-15713085(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y6E2A.1
Entrez Gene 189372 Entrez gene
SwissProt O45971 EMBL-EBI
WormBase CE16578 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 1.0E-177
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 1.0E-129
blast CAA15966 Hypothetical protein Y6E2A.2 [Caenorhabditis elegans] ref|NP_506908.1| Seven TM Receptor family member (str-101) [Caenorhabditis elegans] 1.0E-105
blast CAA15966 Hypothetical protein Y6E2A.2 [Caenorhabditis elegans] ref|NP_506908.1| Seven TM Receptor family member (str-101) [Caenorhabditis elegans] 1.0E-103
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 2.0E-86
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 4.0E-84
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-27
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.2E-12
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.1E-27
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 7.7E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506907.1 5 46-68,88-110,160-182,214-236,241-263
Y6E2A.1 5 46-68,88-110,160-182,214-236,241-263
SNAP00000013589 6 15-37,44-63,83-105,155-177,209-231,236-258
GENEFINDER00000013602 3 45-67,95-117,127-149
Sequence
Target Sequence 
>C. ELEGANS:179527_AT
gaagccagatgagtttgcctatgcatcagctcagtatttttatgaagatccagtcactgg
ggaactgacgattcattttcgatcccttctcgccactggagcaatggctatgattatgac
ttttactctcagtgcaatactatattttggaatgcaaacttataagcatttgtacagact
tagctccatagctggcttggataatcgggaaattcaaaatcagctcttccgaactctggt
tgtccagacagctatcccatttatcttcatgtactttccagtttctgtgatgtttctatt
gccgttatttggtatcaaagtcgaggagctgggaaatatcgttccaatttctgttgcgat
atatccttgcttcgaaccactggttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCCAGATGAGTTTGCCTATGCA 620 343 405 Antisense
TTGCCTATGCATCAGCTCAGTATTT 354 701 419 Antisense
ACTGACGATTCATTTTCGATCCCTT 122 99 468 Antisense
GATTATGACTTTTACTCTCAGTGCA 117 429 516 Antisense
GACTTAGCTCCATAGCTGGCTTGGA 646 371 581 Antisense
TCTGGTTGTCCAGACAGCTATCCCA 677 607 639 Antisense
AGCTATCCCATTTATCTTCATGTAC 245 79 654 Antisense
CTTCATGTACTTTCCAGTTTCTGTG 634 221 669 Antisense
TTCTGTGATGTTTCTATTGCCGTTA 578 693 687 Antisense
TTCTGTTGCGATATATCCTTGCTTC 362 693 753 Antisense
TCCTTGCTTCGAACCACTGGTTGCA 357 591 768 Antisense
Sequence Source Affymetrix Proprietary Database