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[179525_at]

Description F36H1.5 /REP_DB=WormBase Gene ID /WP=CE05816 /TR=Q20106 /GB=CAA92993.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      4grp_high_8_8 > 61      6grp_total > 15      4grp_total > 59      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 631
1 2 3 4 range
A 332.4
(1.5)
P 		290
(0.9)
P 		437
(3)
P 		18.3
(-3)
A 		419
B 247.5
(0.2)
P 		384.9
(2.5)
P 		415
(3)
P 		51
(-3)
P 		364
C 292.1
(-0.6)
P 		416.5
(0.7)
P 		649.4
(3)
P 		46.9
(-3)
A 		603
avr 290.7
(0.3) 		363.8
(1.2) 		500.5
(3) 		38.7
(-3) 		462

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 197.3
(3)
P 		148.2
(1.1)
P 		141.9
(0.8)
P 		89.9
(-1.3)
P 		60.1
(-2.4)
P 		46
(-3)
A 		151
B 302
(2.8)
P 		309.1
(3)
P 		119
(-1.2)
P 		62.7
(-2.4)
P 		108
(-1.4)
P 		35.4
(-3)
P 		274
C 226.7
(3)
P 		224.3
(2.9)
P 		83.5
(-1.6)
P 		87.3
(-1.5)
P 		39.9
(-3)
P 		50.5
(-2.7)
P 		187
avr 242
(3) 		227.2
(2.6) 		114.8
(-0.9) 		80
(-1.9) 		69.3
(-2.2) 		44
(-3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 121
(3)
P 		63
(0.1)
P 		114.2
(2.7)
P 		2.7
(-3)
A 		118
B 78.9
(1.8)
P 		95.1
(2.9)
P 		96.2
(3)
P 		10.9
(-3)
P 		85
C 96.7
(-0.6)
P 		119.7
(0.1)
P 		226.3
(3)
P 		7.9
(-3)
A 		218
avr 98.9
(1) 		92.6
(0.7) 		145.6
(3) 		7.2
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 36.4
(0.6)
P 		52.7
(3)
P 		30.9
(-0.2)
P 		22.8
(-1.3)
P 		18.1
(-2)
P 		11.2
(-3)
A 		42
B 105.1
(3)
P 		102.9
(2.9)
P 		28.9
(-2)
P 		16.6
(-2.8)
P 		43.9
(-1)
P 		13.2
(-3)
P 		92
C 84
(3)
P 		68.4
(1.7)
P 		21.3
(-2.3)
P 		17.6
(-2.6)
P 		12.9
(-3)
P 		16.9
(-2.7)
P 		71
avr 75.2
(3) 		74.7
(3) 		27
(-1.7) 		19
(-2.5) 		25
(-1.9) 		13.8
(-3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8809
Sequence Type Exemplar sequence
Representative Public ID F36H1.5 NCBI
Target Description F36H1.5 /REP_DB=WormBase Gene ID /WP=CE05816 /TR=Q20106 /GB=CAA92993.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069654 NCBI Caenorhabditis elegans F36H1.5 (F36H1.5) mRNA, complete cds. 11/11 None
F36H1.5 ENSEMBL cdna:known chromosome:CEL140:IV:11030189:11031076:-1 gene:F36H1.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039956 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039970 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11030194-11031082(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36H1.5
Entrez Gene 185380 Entrez gene
SwissProt Q20106 EMBL-EBI
WormBase CE05816 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92993 Hypothetical protein F36H1.5 [Caenorhabditis elegans] ref|NP_502055.1| F36H1.5 [Caenorhabditis elegans] 1.0E-101
blast CAE61982 Hypothetical protein CBG05989 [Caenorhabditis briggsae] 2.0E-70
blast CAE17822 Hypothetical protein F36H1.9 [Caenorhabditis elegans] ref|NP_001023184.1| F36H1.9 [Caenorhabditis elegans] 8.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502055.1 3 54-76,81-103,124-146
F36H1.5 3 54-76,81-103,124-146
Sequence
Target Sequence 
>C. ELEGANS:179525_AT
tgacccacgcattccttgtgattaaatactattggcatattttttttgttgaattttcga
aatgcacttcctcaacacgaggctctgcaaaaaaagaacacgtgaattacagaatgactg
ctgaaaatcgaggattctgtcaactgatttgtcatataaacgttcgaattggatggacaa
tatttggaattgtttttggaatatctgcaattttaacatatgcaatcaaatttcataatt
ggtcagccacagcaacaactgctattgctacactttttgcgtgtgaaacattgtatttgt
attgggctttgaagaaaaatacaattgttaactggaagagtagtacttttcagttgatga
tatggccaaacgtatttattggtcttctcggacttctcggctgccttgtttgctacatta
ttgcaggaatcactcatcagggtgcaggatctatccaagcaatgtatggagagaatcttt
ggtttactggatcatggagtcttgtgatcactaaatggacttggcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCCACGCATTCCTTGTGATTAA 704 569 14 Antisense
GAATTTTCGAAATGCACTTCCTCAA 519 325 64 Antisense
ACTTCCTCAACACGAGGCTCTGCAA 670 103 79 Antisense
GATTCTGTCAACTGATTTGTCATAT 35 433 146 Antisense
TTCATAATTGGTCAGCCACAGCAAC 570 687 245 Antisense
ACTGCTATTGCTACACTTTTTGCGT 61 99 271 Antisense
GTATTTATTGGTCTTCTCGGACTTC 616 453 385 Antisense
TATTGCAGGAATCACTCATCAGGGT 169 661 432 Antisense
TCATCAGGGTGCAGGATCTATCCAA 275 621 447 Antisense
GAATCTTTGGTTTACTGGATCATGG 628 327 486 Antisense
GTGATCACTAAATGGACTTGGCAAA 202 481 517 Antisense
Sequence Source Affymetrix Proprietary Database