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[179524_at]

Description R11D1.2 /REP_DB=WormBase Gene ID /WP=CE06307 /TR=Q21935 /GB=CAA99902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 05      6grp_total > 21      4grp_total > 20      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 44.9
(-1.3)
P 		31.9
(-2.3)
P 		23.5
(-3)
A 		99.3
(3)
P 		76
B 44.1
(3)
P 		38.5
(-3)
P 		42.1
(0.9)
P 		43.5
(2.4)
P 		6
C 45.4
(1.9)
A 		50.5
(3)
P 		21.5
(-3)
A 		41.1
(1.1)
A 		29
avr 44.8
(-0.1) 		40.3
(-0.9) 		29
(-3) 		61.3
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 29
(-1.2)
P 		27.7
(-1.5)
P 		39.6
(1.2)
P 		21.2
(-3)
A 		47.3
(3)
A 		38.7
(1)
A 		26
B 27.8
(0.2)
M 		32.8
(1.2)
P 		42
(3)
P 		30.3
(0.7)
A 		23.6
(-0.6)
P 		11.1
(-3)
A 		31
C 27.3
(1.2)
P 		38.2
(3)
P 		19.9
(-0.1)
A 		9.1
(-1.9)
A 		22.8
(0.4)
A 		2.5
(-3)
A 		36
avr 28
(0.9) 		32.9
(2.7) 		33.8
(3) 		20.2
(-2) 		31.2
(2) 		17.4
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 16.3
(3)
P 		6.9
(-2.5)
P 		6.1
(-3)
A 		14.5
(1.9)
P 		10
B 14
(3)
P 		9.5
(-2.7)
P 		9.8
(-2.4)
P 		9.3
(-3)
P 		5
C 15
(3)
A 		14.5
(2.6)
P 		7.5
(-2.6)
A 		6.9
(-3)
A 		8
avr 15.1
(3) 		10.3
(-0.9) 		7.8
(-3) 		10.2
(-1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 5.3
(-3)
P 		9.9
(0.1)
P 		8.6
(-0.8)
P 		5.4
(-2.9)
A 		14.3
(3)
A 		9.4
(-0.3)
A 		9
B 9.7
(1.9)
M 		10.9
(3)
P 		10.2
(2.4)
P 		8
(0.4)
A 		9.6
(1.8)
P 		4.2
(-3)
A 		7
C 10.1
(2.1)
P 		11.7
(3)
P 		5.1
(-0.6)
A 		1.8
(-2.4)
A 		7.4
(0.6)
A 		0.8
(-3)
A 		11
avr 8.4
(0.6) 		10.8
(3) 		8
(0.2) 		5.1
(-2.7) 		10.4
(2.6) 		4.8
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12887
Sequence Type Exemplar sequence
Representative Public ID R11D1.2 NCBI
Target Description R11D1.2 /REP_DB=WormBase Gene ID /WP=CE06307 /TR=Q21935 /GB=CAA99902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073772(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073772 NCBI Caenorhabditis elegans R11D1.2 (R11D1.2) mRNA, complete cds. 11/11 None
SNAP00000040850 ENSEMBL cdna:SNAP chromosome:CEL140:V:12711966:12713290:1 11/11 None
GENEFINDER00000040863 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12710802:12713290:1 11/11 None
R11D1.2 ENSEMBL cdna:known chromosome:CEL140:V:12711966:12713290:1 gene:R11D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12711965-12713290(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R11D1.2
Entrez Gene 187803 Entrez gene
SwissProt Q21935 EMBL-EBI
WormBase CE06307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99902 Hypothetical protein R11D1.2 [Caenorhabditis elegans] ref|NP_506173.1| R11D1.2 [Caenorhabditis elegans] 0.0
blast CAE60952 Hypothetical protein CBG04680 [Caenorhabditis briggsae] 2.0E-21
blast CAE60952 Hypothetical protein CBG04680 [Caenorhabditis briggsae] 3.0E-21
blast CAE69333 Hypothetical protein CBG15410 [Caenorhabditis briggsae] 9.0E-10
Sequence
Target Sequence 
>C. ELEGANS:179524_AT
aaatctaccaccagaagactttatttttgcttcttatcgaaaaaatgatgatttctaccc
aatgattctcgataaacaaaatgcaacaaagaacttgactctgagattaaatgcattcga
agaatttcattatgatttgagtcgtttcgaatatgattcattggaaatcaagcatgcatg
ctgggtaaaattcagtcaattatatgatttaaaatgcaagtcaattgctctaagatgcac
aaagttcgaaaggaatgacttgaaagaattaatcagaaaatggcgagcaggatggacgcc
caagtgggaaagcctttacatcaagttttggtcttttgttaatgtttttgaatgtgttga
aggagattatgatatcattgcaactagacagagaaacgaaattaatttggaatctcaaat
ccaattgtatagatttcaactcggatatgtttgctcgccaaaaaagatgataatgctgta
tggttttcatatagttcgggaaaatcgagatgtcgcatcaatattaatggtcgacgatga
gatggcaatgttttatgttcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTACCACCAGAAGACTTTATT 380 113 396 Antisense
GATGATTTCTACCCAATGATTCTCG 107 411 442 Antisense
GACTCTGAGATTAAATGCATTCGAA 583 373 492 Antisense
GCAAGTCAATTGCTCTAAGATGCAC 605 321 611 Antisense
GCGAGCAGGATGGACGCCCAAGTGG 636 287 678 Antisense
CGCCCAAGTGGGAAAGCCTTTACAT 595 231 692 Antisense
GCCTTTACATCAAGTTTTGGTCTTT 458 281 707 Antisense
AACTCGGATATGTTTGCTCGCCAAA 606 141 833 Antisense
GATGTCGCATCAATATTAATGGTCG 286 409 904 Antisense
AATGGTCGACGATGAGATGGCAATG 329 159 921 Antisense
GAGATGGCAATGTTTTATGTTCAGA 192 395 934 Antisense
Sequence Source Affymetrix Proprietary Database