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[179523_at]

Description F59A2.5 /REP_DB=WormBase Gene ID /WP=CE01023 /TR=Q21019 /GB=CAA84326.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 74      6grp_total > 75      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 781
1 2 3 4 range
A 484.1
(-3)
P 		553.7
(-2.4)
P 		636.4
(-1.6)
P 		1145.5
(3)
P 		661
B 483
(-3)
P 		558.5
(-2.4)
P 		621.1
(-1.9)
P 		1233.6
(3)
P 		751
C 452.7
(-3)
P 		527.3
(-2.3)
P 		555.5
(-2.1)
P 		1121.1
(3)
P 		668
avr 473.3
(-3) 		546.5
(-2.4) 		604.3
(-1.9) 		1166.7
(3) 		693

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 589.8
(-2.8)
P 		580
(-3)
P 		909.8
(3)
P 		721.8
(-0.4)
P 		750.7
(0.1)
P 		818.2
(1.3)
P 		330
B 762.9
(-1.3)
P 		728.1
(-3)
P 		831.4
(2.1)
P 		747.3
(-2)
P 		849.1
(3)
P 		842.6
(2.7)
P 		121
C 608
(-3)
P 		814.7
(0.5)
P 		627.5
(-2.7)
P 		916.5
(2.3)
P 		617.4
(-2.8)
P 		958.2
(3)
P 		350
avr 653.6
(-3) 		707.6
(-1.5) 		789.6
(0.7) 		795.2
(0.9) 		739.1
(-0.7) 		873
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 176.3
(3)
P 		120.2
(-3)
P 		166.4
(1.9)
P 		167.7
(2.1)
P 		56
B 154
(-2.2)
P 		137.9
(-3)
P 		143.9
(-2.7)
P 		262.9
(3)
P 		125
C 149.9
(-3)
P 		151.6
(-2.8)
P 		193.6
(3)
P 		189
(2.4)
P 		44
avr 160.1
(-1) 		136.6
(-3) 		168
(-0.3) 		206.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 108.7
(-3)
P 		206.3
(2)
P 		198.1
(1.6)
P 		183.1
(0.8)
P 		226.5
(3)
P 		199.2
(1.6)
P 		118
B 265.4
(-0.2)
P 		242.4
(-1.2)
P 		201.9
(-2.8)
P 		197.9
(-3)
P 		345
(3)
P 		314.2
(1.7)
P 		147
C 225.4
(-0.6)
P 		248.6
(0.3)
P 		159.7
(-3)
P 		184.3
(-2.1)
P 		199.8
(-1.5)
P 		320.8
(3)
P 		161
avr 199.8
(-2.1) 		232.4
(0) 		186.6
(-3) 		188.4
(-2.9) 		257.1
(1.6) 		278.1
(3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179523_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7236
Sequence Type Exemplar sequence
Representative Public ID F59A2.5 NCBI
Target Description F59A2.5 /REP_DB=WormBase Gene ID /WP=CE01023 /TR=Q21019 /GB=CAA84326.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065303(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065303 NCBI Caenorhabditis elegans F59A2.5 (F59A2.5) mRNA, complete cds. 11/11 None
SNAP00000026716 ENSEMBL cdna:SNAP chromosome:CEL140:III:3404865:3405395:1 11/11 None
GENEFINDER00000026719 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3404865:3405395:1 11/11 None
F59A2.5 ENSEMBL cdna:known chromosome:CEL140:III:3404863:3405395:1 gene:F59A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3404864-3405395(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59A2.5
Entrez Gene 175444 Entrez gene
SwissProt Q21019 EMBL-EBI
WormBase CE01023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA84326 Hypothetical protein F59A2.5 [Caenorhabditis elegans] ref|NP_497704.1| F59A2.5 [Caenorhabditis elegans] 3.0E-51
blast CAE65026 Hypothetical protein CBG09864 [Caenorhabditis briggsae] 7.0E-37
Sequence
Target Sequence 
>C. ELEGANS:179523_AT
gtagacacaagctcatcgtcatcttcagaggacgaatgtgacccaagctctccgagcacg
gcatatatccactcagcaagcgtacgattatccgtcggaacagaagaagcggctcgaacc
gtggcagatgtcataaaaatcgataaagagccgagaagaagtggtgctcgacgggaagtg
tgcagcgaaggcgaatttgtagtcataaaaatcgaatcaaaagatccgaaatcattgtca
aaatccattgccaacgctgttgatatgatcgatttgtccgtgaaaactatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGACACAAGCTCATCGTCATCTT 705 455 19 Antisense
AGGACGAATGTGACCCAAGCTCTCC 321 55 47 Antisense
AAGCTCTCCGAGCACGGCATATATC 205 151 63 Antisense
GCATATATCCACTCAGCAAGCGTAC 101 309 79 Antisense
GCAAGCGTACGATTATCCGTCGGAA 479 319 94 Antisense
GGAACAGAAGAAGCGGCTCGAACCG 414 527 115 Antisense
GGCTCGAACCGTGGCAGATGTCATA 150 539 129 Antisense
GGTGCTCGACGGGAAGTGTGCAGCG 684 501 181 Antisense
GTGCAGCGAAGGCGAATTTGTAGTC 215 479 198 Antisense
AAAATCCATTGCCAACGCTGTTGAT 139 133 258 Antisense
GATCGATTTGTCCGTGAAAACTATC 450 417 285 Antisense
Sequence Source Affymetrix Proprietary Database