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[179522_at]

Description B0284.4 /REP_DB=WormBase Gene ID /WP=CE00652 /TR=Q17468 /GB=CAA83222.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 2.9
(-3)
A 		10.9
(-1.6)
A 		5.1
(-2.6)
A 		38.1
(3)
A 		35
B 8.9
(0.9)
A 		3.3
(-3)
A 		3.5
(-2.9)
A 		11.9
(3)
A 		9
C 3.1
(-3)
A 		4.3
(-2.9)
A 		8
(-2.6)
A 		81.7
(3)
A 		79
avr 5
(-3) 		6.2
(-2.8) 		5.5
(-2.9) 		43.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 3.7
(-3)
A 		9.6
(-2.7)
A 		10.4
(-2.7)
A 		27.8
(-1.9)
A 		114.7
(2)
A 		135.8
(3)
A 		132
B 11.2
(-2.7)
A 		3
(-3)
A 		12.9
(-2.6)
A 		3
(-3)
A 		95.2
(0.4)
A 		167.5
(3)
P 		165
C 2.8
(-3)
A 		45.7
(-1.2)
A 		11.2
(-2.6)
A 		7.1
(-2.8)
A 		57.1
(-0.7)
A 		143.6
(3)
P 		141
avr 5.9
(-3) 		19.4
(-2.4) 		11.5
(-2.8) 		12.6
(-2.7) 		89
(0.5) 		149
(3) 		143
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1
(-3)
A 		2.4
(-1.2)
A 		1.3
(-2.6)
A 		5.6
(3)
A 		5
B 2.9
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		2.5
(1.9)
A 		2
C 1
(-3)
A 		1.2
(-2.9)
A 		2.8
(-2.2)
A 		13.8
(3)
A 		13
avr 1.6
(-2.9) 		1.5
(-3) 		1.6
(-2.9) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 0.7
(-3)
A 		3.4
(-2.5)
A 		2.3
(-2.7)
A 		7
(-1.9)
A 		34.6
(3)
A 		33.1
(2.7)
A 		34
B 3.9
(-2.7)
A 		1
(-3)
A 		3.1
(-2.8)
A 		0.8
(-3)
A 		38.7
(0.7)
A 		62.5
(3)
P 		62
C 1
(-3)
A 		13.9
(-1.4)
A 		2.8
(-2.8)
A 		1.4
(-2.9)
A 		18.5
(-0.8)
A 		48.1
(3)
P 		47
avr 1.9
(-3) 		6.1
(-2.5) 		2.7
(-2.9) 		3.1
(-2.8) 		30.6
(0.7) 		47.9
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6264
Sequence Type Exemplar sequence
Representative Public ID B0284.4 NCBI
Target Description B0284.4 /REP_DB=WormBase Gene ID /WP=CE00652 /TR=Q17468 /GB=CAA83222.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065484 NCBI Caenorhabditis elegans B0284.4 (B0284.4) mRNA, complete cds. 11/11 None
SNAP00000025283 ENSEMBL cdna:SNAP chromosome:CEL140:III:4384509:4387726:1 11/11 None
GENEFINDER00000025285 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4384900:4387726:1 11/11 None
B0284.4 ENSEMBL cdna:known chromosome:CEL140:III:4384756:4387726:1 gene:B0284.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4384755-4387726(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0284.4
Entrez Gene 181903 Entrez gene
SwissProt Q17468 EMBL-EBI
WormBase CE00652 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83222 Hypothetical protein B0284.4 [Caenorhabditis elegans] ref|NP_497885.1| B0284.4 [Caenorhabditis elegans] 0.0
blast CAA83223 Hypothetical protein B0284.2 [Caenorhabditis elegans] ref|NP_497884.1| B0284.2 [Caenorhabditis elegans] 3.0E-65
blast CAA83223 Hypothetical protein B0284.2 [Caenorhabditis elegans] ref|NP_497884.1| B0284.2 [Caenorhabditis elegans] 5.0E-65
blast CAA83220 Hypothetical protein B0284.1 [Caenorhabditis elegans] ref|NP_497882.1| B0284.1 [Caenorhabditis elegans] 3.0E-50
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.0890000015497208
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.529999971389771
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.439999997615814
Sequence
Target Sequence 
>C. ELEGANS:179522_AT
gtatgggatcttatgcctttcaacttaaaccggaagatccggtttggtcgcggacgtcgc
aagttgcatattgtaagaaggaaattcaaaaagtggacttgctgctggaagttttgagtg
acaatactgaagaaatatctaaacagcgtgaaaatcgaaaccaggaagttctccgatgtc
atgctgttgcttgtctcattcagaatgctatcaccaccgtaagaaactctctcaatcaat
ttggagcttcattacaggaaaatacatttacaaattgtattgggtattacacagatctac
ttgagaagaacaagactctaactgatgtaattgtccagttaccagcagtgtctcgatcta
accatacaacaagtgccataatgtacagctctcagagatttgctattgatgttcaaaatg
atcgcctggctcttgagcagaaaggtcagctggctcttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGGGATCTTATGCCTTTCAACT 603 453 779 Antisense
GAAGATCCGGTTTGGTCGCGGACGT 294 337 811 Antisense
GTCGCGGACGTCGCAAGTTGCATAT 289 475 825 Antisense
GAAACCAGGAAGTTCTCCGATGTCA 695 357 935 Antisense
CCGATGTCATGCTGTTGCTTGTCTC 641 263 951 Antisense
TTCAGAATGCTATCACCACCGTAAG 180 685 977 Antisense
AATTGTCCAGTTACCAGCAGTGTCT 487 179 1107 Antisense
AGCAGTGTCTCGATCTAACCATACA 515 77 1122 Antisense
AGTGCCATAATGTACAGCTCTCAGA 529 59 1150 Antisense
AAATGATCGCCTGGCTCTTGAGCAG 111 121 1194 Antisense
GCAGAAAGGTCAGCTGGCTCTTCAG 330 311 1215 Antisense
Sequence Source Affymetrix Proprietary Database