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[179521_at]

Description C14A6.7 /REP_DB=WormBase Gene ID /WP=CE18498 /TR=Q9XVD9 /GB=CAB03884.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.7
(-3)
A 		15.2
(3)
A 		7.6
(-0.6)
A 		4.7
(-2)
A 		13
B 4.5
(-3)
A 		11.2
(2.6)
A 		6
(-1.8)
A 		11.7
(3)
A 		7
C 6.1
(0.3)
A 		5.5
(-0.4)
A 		8.2
(3)
A 		3.5
(-3)
A 		5
avr 4.4
(-3) 		10.6
(3) 		7.3
(-0.2) 		6.6
(-0.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 39
(3)
A 		2.5
(-3)
A 		5.3
(-2.5)
A 		13
(-1.3)
A 		8.3
(-2)
A 		8.6
(-2)
A 		37
B 2.5
(-3)
A 		3.2
(-2.2)
A 		4.2
(-1)
A 		5.4
(0.5)
A 		3.6
(-1.7)
A 		7.5
(3)
A 		5
C 2.9
(-2.9)
A 		10.2
(0.8)
A 		10.5
(1)
A 		14.5
(3)
A 		5.9
(-1.4)
A 		2.7
(-3)
A 		12
avr 14.8
(3) 		5.3
(-3) 		6.7
(-2.1) 		11
(0.6) 		5.9
(-2.6) 		6.3
(-2.4) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-2.3)
A 		3.3
(3)
A 		2
(0)
A 		0.7
(-3)
A 		3
B 1.4
(-3)
A 		2.8
(3)
A 		1.4
(-3)
A 		2.5
(1.7)
A 		1
C 2
(0.7)
A 		1.6
(-0.4)
A 		2.9
(3)
A 		0.6
(-3)
A 		2
avr 1.5
(-2.1) 		2.6
(3) 		2.1
(0.7) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 7.2
(3)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		3.3
(-0.7)
A 		2.5
(-1.5)
A 		2.1
(-1.9)
A 		6
B 0.9
(-3)
A 		1.1
(-2.4)
A 		1
(-2.7)
A 		1.4
(-1.4)
A 		1.5
(-1.1)
A 		2.8
(3)
A 		2
C 1.1
(-2.5)
A 		3.1
(3)
A 		2.7
(1.9)
A 		2.9
(2.5)
A 		1.9
(-0.3)
A 		0.9
(-3)
A 		2
avr 3.1
(3) 		1.7
(-2.6) 		1.6
(-3) 		2.5
(0.6) 		2
(-1.4) 		1.9
(-1.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14370
Sequence Type Exemplar sequence
Representative Public ID C14A6.7 NCBI
Target Description C14A6.7 /REP_DB=WormBase Gene ID /WP=CE18498 /TR=Q9XVD9 /GB=CAB03884.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075149 NCBI Caenorhabditis elegans C14A6.7 (C14A6.7) mRNA, complete cds. 11/11 None
C14A6.7 ENSEMBL cdna:known chromosome:CEL140:V:18170208:18170940:-1 gene:C14A6.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075427 2/11 Cross Hyb Matching Probes None
GENEFINDER00000009401 7/11 Cross Hyb Matching Probes None
GENEFINDER00000038174 1/11 Cross Hyb Matching Probes None
W04E12.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18170207-18170940(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.7
Entrez Gene 182588 Entrez gene
SwissProt Q9XVD9 EMBL-EBI
WormBase CE18498 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03884 Hypothetical protein C14A6.7 [Caenorhabditis elegans] ref|NP_507550.1| C14A6.7 [Caenorhabditis elegans] 3.0E-43
blast CAB04915 Hypothetical protein W04E12.5 [Caenorhabditis elegans] ref|NP_507828.2| W04E12.5 [Caenorhabditis elegans] 3.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507550.1 1 78-100
C14A6.7 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:179521_AT
ctccgcgaattctggcttgacgggttggctcagcaggcgagaagagacgcctacaccgcc
gaagcaagtggaaatcacaaaaaagctcgggagcttttgaaaaacgcggaaaaatacgag
gctgaggcggagattattcacgaggaaattgctcaatcgtggaaagcttcccgaaatgcg
aaagaattctcaaattttcaactaataatccttgctctgtctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCGCGAATTCTGGCTTGACGGGT 232 233 58 Antisense
ATTCTGGCTTGACGGGTTGGCTCAG 657 9 66 Antisense
TGGCTCAGCAGGCGAGAAGAGACGC 71 545 83 Antisense
GGCGAGAAGAGACGCCTACACCGCC 108 543 93 Antisense
GCCTACACCGCCGAAGCAAGTGGAA 642 279 106 Antisense
ACCGCCGAAGCAAGTGGAAATCACA 562 89 112 Antisense
AAAATACGAGGCTGAGGCGGAGATT 423 131 168 Antisense
GAGGCGGAGATTATTCACGAGGAAA 390 403 181 Antisense
ATTGCTCAATCGTGGAAAGCTTCCC 300 7 205 Antisense
GGAAAGCTTCCCGAAATGCGAAAGA 99 527 218 Antisense
AACTAATAATCCTTGCTCTGTCTCC 41 141 257 Antisense
Sequence Source Affymetrix Proprietary Database