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[179520_at]

Description C06B8.6 /REP_DB=WormBase Gene ID /WP=CE07974 /TR=O17572 /GB=CAB03849.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 62      4grp_total > 27      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 42.3
(-2.3)
P 		53.3
(-0.4)
A 		38.6
(-3)
A 		72
(3)
P 		33
B 60.3
(3)
P 		53.2
(-1.3)
A 		50.4
(-3)
A 		55.7
(0.2)
P 		10
C 21.1
(-3)
A 		82.4
(1)
M 		22.9
(-2.9)
A 		112.7
(3)
P 		92
avr 41.2
(-2.5) 		63
(0.6) 		37.3
(-3) 		80.1
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 12.2
(-3)
A 		42.8
(0.2)
P 		61.5
(2.1)
P 		70.4
(3)
A 		29.1
(-1.3)
A 		36.3
(-0.5)
A 		58
B 26.8
(-3)
A 		57.1
(3)
A 		46.7
(0.9)
A 		54.1
(2.4)
P 		34
(-1.6)
P 		28.1
(-2.7)
A 		30
C 17.9
(-1.5)
A 		49.3
(1.7)
P 		61.7
(3)
A 		46
(1.4)
M 		35.6
(0.3)
P 		3.8
(-3)
A 		58
avr 19
(-3) 		49.7
(1.9) 		56.6
(3) 		56.8
(3) 		32.9
(-0.8) 		22.7
(-2.4) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15.4
(3)
P 		11.6
(-1.3)
A 		10.1
(-3)
A 		10.5
(-2.5)
P 		5
B 19.2
(3)
P 		13.1
(-1.9)
A 		11.7
(-3)
A 		11.9
(-2.8)
P 		8
C 7
(-3)
A 		23.7
(3)
M 		8
(-2.6)
A 		19
(1.3)
P 		17
avr 13.9
(0.9) 		16.1
(3) 		9.9
(-3) 		13.8
(0.8) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.3
(-3)
A 		15.2
(2)
P 		13.4
(1.3)
P 		17.8
(3)
A 		8.8
(-0.5)
A 		8.8
(-0.5)
A 		16
B 9.3
(-3)
A 		19
(3)
A 		11.3
(-1.8)
A 		14.3
(0.1)
P 		13.8
(-0.2)
P 		10.5
(-2.3)
A 		10
C 6.6
(-0.8)
A 		15
(2.7)
P 		15.7
(3)
A 		9.3
(0.3)
M 		11.5
(1.3)
P 		1.3
(-3)
A 		14
avr 6.1
(-3) 		16.4
(3) 		13.5
(1.3) 		13.8
(1.5) 		11.4
(0.1) 		6.9
(-2.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14637
Sequence Type Exemplar sequence
Representative Public ID C06B8.6 NCBI
Target Description C06B8.6 /REP_DB=WormBase Gene ID /WP=CE07974 /TR=O17572 /GB=CAB03849.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074457(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074457 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-219) (srh-219) mRNA, complete cds. 10/11 None
GENEFINDER00000044328 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15499346:15500122:1 10/11 None
C06B8.6 ENSEMBL cdna:known chromosome:CEL140:V:15498881:15500122:1 gene:C06B8.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15499042-15500480(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-219
Ensembl C06B8.6
Entrez Gene 182301 Entrez gene
SwissProt O17572 EMBL-EBI
WormBase CE35953 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03849 Hypothetical protein C06B8.6 [Caenorhabditis elegans] ref|NP_506858.2| Serpentine Receptor, class H family member (srh-219) [Caenorhabditis elegans] 0.0
blast CAB03849 Hypothetical protein C06B8.6 [Caenorhabditis elegans] ref|NP_506858.2| Serpentine Receptor, class H family member (srh-219) [Caenorhabditis elegans] 1.0E-131
blast CAE11302 Hypothetical protein C06B8.10 [Caenorhabditis elegans] ref|NP_001021372.1| Serpentine Receptor, class H family member (srh-218) [Caenorhabditis elegans] 1.0E-103
blast CAE11302 Hypothetical protein C06B8.10 [Caenorhabditis elegans] ref|NP_001021372.1| Serpentine Receptor, class H family member (srh-218) [Caenorhabditis elegans] 7.0E-66
blast AAB18309 Serpentine receptor, class h protein 212 [Caenorhabditis elegans] ref|NP_504011.1| Serpentine Receptor, class H family member (srh-212) [Caenorhabditis elegans] 6.0E-52
blast CAB05145 Hypothetical protein C35D6.2 [Caenorhabditis elegans] emb|CAB05144.1| Hypothetical protein C35D6.1 [Caenorhabditis elegans] ref|NP_502947.1| Serpentine Receptor, class H family member (srh-227) [Caenorhabditis elegans] ref|NP_502946.1| Serpentine Receptor, class H family member (srh-228) [Caenorhabditis elegans] 6.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.6E-93
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506858.2 7 26-48,68-90,110-132,145-167,202-224,249-271,281-303
C06B8.6 7 26-48,68-90,110-132,145-167,202-224,249-271,281-303
GENEFINDER00000044328 4 28-50,85-107,132-154,164-186
Sequence
Target Sequence 
>C. ELEGANS:179520_AT
actacacaattgccgtgctcatgttcttgccagttttttatcagattccagatcaaactc
atgccagagaatttattttagagcacctaccatgtctctcctctgaaatcttatctctac
cgttatttgttgtcgctgagaatgctggcttaatgcttatcacttccatgatggaacttg
ggtttttatgtgctcagggagcatttctaatgtttttgttaaaccgatccataaaaaaat
tcggaaatcatttgtcccagcgaacactggaaatgcagaacagatttatgaaagccatca
tcttacaattgcttattccatcgttctgcttgaacaccccttttttctacattggatttt
ctggagcctttggttacttcaaccaaaagcttacaaacgtatcattcatactgattgcaa
cacatggatttttctcgtcacttttcatgctttttgtacatgcttcttatcgagaagcgg
taaccacacctgtccagagagcctgcgtctctccagctaccctcttatctctcatgttga
ctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACACAATTGCCGTGCTCATGTT 129 101 302 Antisense
GATTCCAGATCAAACTCATGCCAGA 668 433 345 Antisense
ATGTCTCTCCTCTGAAATCTTATCT 379 49 393 Antisense
ATCTCTACCGTTATTTGTTGTCGCT 56 31 414 Antisense
TGCTGGCTTAATGCTTATCACTTCC 367 581 444 Antisense
AAATCATTTGTCCCAGCGAACACTG 674 117 546 Antisense
CAATTGCTTATTCCATCGTTCTGCT 424 179 607 Antisense
TTCTGGAGCCTTTGGTTACTTCAAC 22 693 660 Antisense
GCAACACATGGATTTTTCTCGTCAC 550 319 718 Antisense
TCTCGTCACTTTTCATGCTTTTTGT 1 613 734 Antisense
CCTCTTATCTCTCATGTTGACTCAA 133 269 822 Antisense
Sequence Source Affymetrix Proprietary Database