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[179519_at]

Description T16A9.2 /REP_DB=WormBase Gene ID /WP=CE13722 /TR=Q22521 /GB=CAB00876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 02      6grp_cgc > 80      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 9
(-1.7)
A 		3.5
(-2.8)
A 		2.6
(-3)
A 		31.9
(3)
A 		29
B 4.1
(-3)
A 		4.6
(-2.9)
A 		5.5
(-2.7)
A 		28.2
(3)
A 		24
C 11.9
(-2.6)
A 		8.5
(-3)
A 		15.3
(-2.2)
A 		56.5
(3)
A 		48
avr 8.3
(-2.5) 		5.5
(-3) 		7.8
(-2.6) 		38.9
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 30.5
(2.5)
A 		3.7
(-2.7)
A 		33.2
(3)
A 		5.2
(-2.4)
A 		2.3
(-3)
A 		5.9
(-2.3)
A 		31
B 7.5
(3)
A 		2.3
(-2.5)
A 		4
(-0.7)
A 		4.7
(0.1)
A 		1.8
(-3)
A 		2.9
(-1.8)
A 		6
C 1.9
(-2.9)
A 		9.6
(0.5)
A 		15.3
(3)
A 		4.2
(-1.9)
A 		1.6
(-3)
A 		4
(-1.9)
A 		14
avr 13.3
(1.4) 		5.2
(-1.7) 		17.5
(3) 		4.7
(-1.9) 		1.9
(-3) 		4.3
(-2.1) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3.3
(0.9)
A 		0.8
(-2.9)
A 		0.7
(-3)
A 		4.7
(3)
A 		4
B 1.3
(-2.8)
A 		1.1
(-3)
A 		1.3
(-2.8)
A 		6
(3)
A 		5
C 3.9
(-1.7)
A 		2.4
(-3)
A 		5.3
(-0.5)
A 		9.5
(3)
A 		7
avr 2.8
(-1.4) 		1.4
(-3) 		2.4
(-1.9) 		6.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 5.6
(1.5)
A 		1.3
(-2.4)
A 		7.2
(3)
A 		1.3
(-2.4)
A 		0.7
(-3)
A 		1.4
(-2.4)
A 		7
B 2.6
(3)
A 		0.8
(-2.7)
A 		1
(-2.1)
A 		1.2
(-1.4)
A 		0.7
(-3)
A 		1.1
(-1.7)
A 		2
C 0.7
(-2.6)
A 		2.9
(1.2)
A 		3.9
(3)
A 		0.8
(-2.5)
A 		0.5
(-3)
A 		1.3
(-1.6)
A 		3
avr 3
(1.2) 		1.7
(-1.1) 		4
(3) 		1.1
(-2.1) 		0.6
(-3) 		1.3
(-1.8) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13149
Sequence Type Exemplar sequence
Representative Public ID T16A9.2 NCBI
Target Description T16A9.2 /REP_DB=WormBase Gene ID /WP=CE13722 /TR=Q22521 /GB=CAB00876.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074117(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074117 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-230) (str-230) mRNA, complete cds. 11/11 None
GENEFINDER00000032391 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14211758:14213258:-1 10/11 None
T16A9.2 ENSEMBL cdna:known chromosome:CEL140:V:14211758:14213414:-1 gene:T16A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14211757-14213414(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-230
Ensembl T16A9.2
Entrez Gene 188548 Entrez gene
SwissProt Q22521 EMBL-EBI
WormBase CE13722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 0.0
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 1.0E-146
blast CAE75003 Hypothetical protein CBG22904 [Caenorhabditis briggsae] 1.0E-75
blast CAE61086 Hypothetical protein CBG04839 [Caenorhabditis briggsae] 3.0E-65
blast CAE75003 Hypothetical protein CBG22904 [Caenorhabditis briggsae] 2.0E-62
blast CAE61170 Hypothetical protein CBG04938 [Caenorhabditis briggsae] 5.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506518.1 8 7-29,44-62,92-114,129-151,198-220,257-279,286-305,315-332
T16A9.2 8 7-29,44-62,92-114,129-151,198-220,257-279,286-305,315-332
GENEFINDER00000032391 5 46-65,77-99,149-171,207-229,234-256
Sequence
Target Sequence 
>C. ELEGANS:179519_AT
tttatgatgcttagcacctccttctctattacgattattttcgcggcaaaggggtatttt
gaagtgaaaaagttgagctcaatagcaacatctcattcgtctgctagcaaaactctacaa
gctcaattattttactcattagtcattcagacagttattccagtgattcttattcatttc
ccaacaactatcattcttattaatgcattttttggtattggacgggaagttcatggtcat
atccttacagtatctatttgtctatttccagcaatagattccttgccaagcatgattata
attaggccttatcggcttgcaatcaagagtgggttttcgattttttttacaatgatttta
gaatttgtttcaggagttttgaaatatccattccgacgtagaagctcttcgattgcggcg
tcaaatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATGATGCTTAGCACCTCCTTCT 357 673 628 Antisense
ACCTCCTTCTCTATTACGATTATTT 212 87 643 Antisense
GAGCTCAATAGCAACATCTCATTCG 160 389 702 Antisense
ACATCTCATTCGTCTGCTAGCAAAA 299 105 715 Antisense
GATTCTTATTCATTTCCCAACAACT 125 431 792 Antisense
TTTCCCAACAACTATCATTCTTATT 179 671 804 Antisense
GGAAGTTCATGGTCATATCCTTACA 582 531 852 Antisense
AGTATCTATTTGTCTATTTCCAGCA 45 63 876 Antisense
AGGCCTTATCGGCTTGCAATCAAGA 492 51 931 Antisense
ATCCATTCCGACGTAGAAGCTCTTC 16 41 1013 Antisense
GCTCTTCGATTGCGGCGTCAAATAC 121 301 1031 Antisense
Sequence Source Affymetrix Proprietary Database