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[179517_at] 7TM receptor, srbc family

Description T19C9.1 /REP_DB=WormBase Gene ID /WP=CE16418 /TR=O45789 /GB=CAB07483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 32      6grp_cgc > 89      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 8.2
(-1.4)
A 		1.5
(-3)
A 		27.3
(3)
A 		14.4
(0)
A 		26
B 1.8
(-3)
A 		6
(-0)
A 		3.5
(-1.8)
A 		10.3
(3)
A 		9
C 3.7
(-2)
A 		2.5
(-3)
A 		9.5
(3)
A 		2.8
(-2.7)
A 		7
avr 4.6
(-2.2) 		3.3
(-3) 		13.4
(3) 		9.2
(0.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 1
(-3)
A 		3.5
(-2.5)
A 		2.7
(-2.7)
A 		2.3
(-2.8)
A 		34.2
(3)
A 		13.3
(-0.8)
A 		33
B 1.3
(-2.8)
A 		5.5
(-1.8)
A 		1.7
(-2.7)
A 		0.7
(-3)
A 		23.9
(3)
A 		8.6
(-1)
A 		23
C 9.6
(1.5)
A 		7.6
(0.4)
A 		3
(-2.2)
A 		1.5
(-3)
A 		11.7
(2.7)
A 		12.2
(3)
A 		11
avr 4
(-2.3) 		5.5
(-1.9) 		2.5
(-2.7) 		1.5
(-3) 		23.3
(3) 		11.4
(-0.3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-0.6)
A 		0.3
(-3)
A 		7.1
(3)
A 		2.1
(-1.4)
A 		7
B 0.6
(-3)
A 		1.5
(0.4)
A 		0.8
(-2.3)
A 		2.2
(3)
A 		2
C 1.2
(-1.5)
A 		0.7
(-2.6)
A 		3.3
(3)
A 		0.5
(-3)
A 		3
avr 1.6
(-1.3) 		0.8
(-3) 		3.7
(3) 		1.6
(-1.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.2
(-3)
A 		1.3
(-2.3)
A 		0.6
(-2.8)
A 		0.6
(-2.8)
A 		10.3
(3)
A 		3.2
(-1.2)
A 		10
B 0.5
(-2.8)
A 		1.8
(-2)
A 		0.4
(-2.9)
A 		0.2
(-3)
A 		9.7
(3)
A 		3.2
(-1.1)
A 		10
C 3.6
(2.2)
A 		2.3
(0.2)
A 		0.8
(-2.2)
A 		0.3
(-3)
A 		3.8
(2.5)
A 		4.1
(3)
A 		4
avr 1.4
(-2.2) 		1.8
(-1.9) 		0.6
(-2.8) 		0.4
(-3) 		7.9
(3) 		3.5
(-0.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12888
Sequence Type Exemplar sequence
Representative Public ID T19C9.1 NCBI
Target Description T19C9.1 /REP_DB=WormBase Gene ID /WP=CE16418 /TR=O45789 /GB=CAB07483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074959(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074959 NCBI Caenorhabditis elegans Serpentine Receptor, class BC (class B-like) family member (srbc-62) (srbc-62) mRNA, complete cds. 11/11 A 
T19C9.1 ENSEMBL cdna:known chromosome:CEL140:V:17220567:17221581:1 gene:T19C9.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17220566-17221581(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srbc family
Gene Symbol srbc-62
Ensembl T19C9.1
Entrez Gene 188596 Entrez gene
SwissProt O45789 EMBL-EBI
WormBase CE16418 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07483 Hypothetical protein T19C9.1 [Caenorhabditis elegans] ref|NP_507360.1| Serpentine Receptor, class BC (class B-like) family member (srbc-62) [Caenorhabditis elegans] 1.0E-141
blast CAA16502 Hypothetical protein F08E10.2 [Caenorhabditis elegans] ref|NP_507425.1| Serpentine Receptor, class BC (class B-like) family member (srbc-61) [Caenorhabditis elegans] 1.0E-126
blast CAB03321 Hypothetical protein T06E6.11 [Caenorhabditis elegans] ref|NP_506832.1| Serpentine Receptor, class BC (class B-like) family member (srbc-63) [Caenorhabditis elegans] 4.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 8.5E-110
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507360.1 7 10-32,45-67,82-104,128-150,178-195,215-237,247-269
T19C9.1 7 10-32,45-67,82-104,128-150,178-195,215-237,247-269
Sequence
Target Sequence 
>C. ELEGANS:179517_AT
gtaactattcgtccgattctagtattggtaatcaacctggacagaatcttcgccacctat
tttccaattttataccataatcatcgtcacaaaattacgttacgcgggattttatcactc
ttgcttgcatgtttactagttcatcaatatatcctctttggatactgtggcgttgtggta
gatgtgccattggactgtgatcatttcaagtgcactgtgaacgcgtgtttttatagttat
acattgtcggtggagaaatacacagattccttgattttagtctcgttggtcattttatcg
tgccggtttgtaatctggaattattctcaaggaacacaaaaaaatgcactgttcacaaaa
gcaacccgaattgcactcatcgactcaattatcatattcatatttagttttcttccctca
gcgatttcccagcaatttcaaagtgtcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACTATTCGTCCGATTCTAGTAT 537 461 286 Antisense
TATACCATAATCATCGTCACAAAAT 131 661 356 Antisense
ACGCGGGATTTTATCACTCTTGCTT 633 89 387 Antisense
CTCTTGCTTGCATGTTTACTAGTTC 394 229 403 Antisense
ACTAGTTCATCAATATATCCTCTTT 61 103 420 Antisense
TATCCTCTTTGGATACTGTGGCGTT 13 659 435 Antisense
GGTAGATGTGCCATTGGACTGTGAT 167 503 462 Antisense
GTCTCGTTGGTCATTTTATCGTGCC 195 471 565 Antisense
TTATCGTGCCGGTTTGTAATCTGGA 700 677 580 Antisense
TGCACTGTTCACAAAAGCAACCCGA 382 575 630 Antisense
TTCCCAGCAATTTCAAAGTGTCAAT 294 697 711 Antisense
Sequence Source Affymetrix Proprietary Database