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[179514_at]

Description T16G1.3 /REP_DB=WormBase Gene ID /WP=CE20073 /TR=Q9XUP6 /GB=CAB04729.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 12.7
(-1.3)
A 		4
(-3)
A 		34.8
(3)
A 		31.7
(2.4)
A 		31
B 20.2
(-0.3)
A 		11.2
(-3)
A 		31.2
(3)
A 		15.1
(-1.8)
A 		20
C 29.7
(-1)
A 		2.2
(-3)
A 		8.1
(-2.6)
A 		86.3
(3)
A 		84
avr 20.9
(-0.7) 		5.8
(-3) 		24.7
(-0.1) 		44.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 10
(-1.7)
A 		9.8
(-1.8)
A 		41.1
(3)
A 		1.8
(-3)
A 		30.7
(1.4)
A 		6.1
(-2.3)
A 		39
B 46.1
(3)
A 		29.2
(0.4)
A 		22
(-0.7)
A 		6.8
(-3)
A 		9.5
(-2.6)
A 		7.5
(-2.9)
A 		39
C 3
(-3)
A 		48
(3)
A 		24
(-0.2)
A 		45.3
(2.6)
A 		10.9
(-1.9)
A 		6.2
(-2.6)
A 		45
avr 19.7
(0.5) 		29
(3) 		29
(3) 		18
(0.1) 		17
(-0.2) 		6.6
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 4.6
(-0.3)
A 		0.9
(-3)
A 		9.1
(3)
A 		4.6
(-0.3)
A 		8
B 6.4
(1.9)
A 		2.8
(-3)
A 		7.2
(3)
A 		3.2
(-2.5)
A 		4
C 9.8
(1)
A 		0.6
(-3)
A 		2.8
(-2.1)
A 		14.5
(3)
A 		14
avr 6.9
(2.5) 		1.4
(-3) 		6.4
(2) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.8
(-2.1)
A 		3.5
(-0.9)
A 		9
(2.8)
A 		0.4
(-3)
A 		9.3
(3)
A 		1.5
(-2.3)
A 		9
B 16
(3)
A 		9.7
(0.3)
A 		5.3
(-1.5)
A 		1.8
(-3)
A 		3.9
(-2.1)
A 		2.8
(-2.6)
A 		14
C 1.1
(-3)
A 		14.7
(3)
A 		6.1
(-0.8)
A 		9.1
(0.5)
A 		3.5
(-1.9)
A 		2.1
(-2.6)
A 		14
avr 6.3
(0.5) 		9.3
(3) 		6.8
(0.9) 		3.8
(-1.6) 		5.6
(-0.1) 		2.1
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179514_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12990
Sequence Type Exemplar sequence
Representative Public ID T16G1.3 NCBI
Target Description T16G1.3 /REP_DB=WormBase Gene ID /WP=CE20073 /TR=Q9XUP6 /GB=CAB04729.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073836 NCBI Caenorhabditis elegans T16G1.3 (T16G1.3) mRNA, complete cds. 11/11 None
SNAP00000020370 ENSEMBL cdna:SNAP chromosome:CEL140:V:12944955:12946401:-1 11/11 None
GENEFINDER00000020382 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12944955:12946919:-1 11/11 None
T16G1.3 ENSEMBL cdna:known chromosome:CEL140:V:12944955:12946919:-1 gene:T16G1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12944954-12946919(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T16G1.3
Entrez Gene 188553 Entrez gene
SwissProt Q9XUP6 EMBL-EBI
WormBase CE36201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04729 Hypothetical protein T16G1.3 [Caenorhabditis elegans] ref|NP_506237.2| T16G1.3 [Caenorhabditis elegans] 0.0
blast CAE64713 Hypothetical protein CBG09499 [Caenorhabditis briggsae] 1.0E-157
blast CAE64713 Hypothetical protein CBG09499 [Caenorhabditis briggsae] 1.0E-150
blast CAE64714 Hypothetical protein CBG09500 [Caenorhabditis briggsae] 1.0E-146
blast CAE64713 Hypothetical protein CBG09499 [Caenorhabditis briggsae] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 6.6E-9
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 6.6E-9
Sequence
Target Sequence 
>C. ELEGANS:179514_AT
tattaaaatctcttgccgttttccaagctgaaagtcttaagttgaacaaaagagagcaag
aaagtgttactggatatgacttggaaaagattgttggaaaaatgtttagccagaatgggc
tcaacagtatttttgaacaagtccgccagattaacaaggaagaactatctgaagctgcag
ataaaattgcagtgtttggcgttgagctgtcgattcatttgggaaatccagccgaagatc
ttgtgcgcctgttcatttctacactctccggttccgagagacaaaaatattgggaaaagc
ttctagagcaattttacgaatatttcatagaagctcttgaagacaaaaatgttccatata
ctcttgagcagctaaaagaatcatatcgtttgtactttgtgaccggaagtcttctcatgt
taccgatgtttggtcccattgctgaggttaaactcgctgaaatgtcagatccagatgaag
ttaaaaaataccgagagattttgaccgagaaaacaaaacgtcttctaaatgacatggaac
atcggcacttgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTAAAATCTCTTGCCGTTTTCCA 600 661 455 Antisense
GCCAGAATGGGCTCAACAGTATTTT 14 281 563 Antisense
TGAACAAGTCCGCCAGATTAACAAG 369 573 588 Antisense
GTGTTTGGCGTTGAGCTGTCGATTC 270 485 646 Antisense
AAATCCAGCCGAAGATCTTGTGCGC 222 119 678 Antisense
TCTACACTCTCCGGTTCCGAGAGAC 257 613 712 Antisense
AATGTTCCATATACTCTTGAGCAGC 15 165 802 Antisense
ACTTTGTGACCGGAAGTCTTCTCAT 534 101 848 Antisense
GTCTTCTCATGTTACCGATGTTTGG 230 469 863 Antisense
GTTTGGTCCCATTGCTGAGGTTAAA 72 451 882 Antisense
TGACATGGAACATCGGCACTTGTAC 559 571 984 Antisense
Sequence Source Affymetrix Proprietary Database