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[179513_at]

Description ZK550.2 /REP_DB=WormBase Gene ID /WP=CE16733 /TR=O62511 /GB=CAB05312.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 58      4grp_total > 09      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2029
1 2 3 4 range
A 244.3
(-3)
P 		529.5
(-2.1)
P 		471.7
(-2.3)
P 		2255.9
(3)
P 		2012
B 307.8
(-3)
P 		380.7
(-2.8)
P 		511.8
(-2.4)
P 		2273.7
(3)
P 		1966
C 258.5
(-3)
P 		450.1
(-2.4)
P 		454.8
(-2.4)
P 		2247.3
(3)
P 		1989
avr 270.2
(-3) 		453.4
(-2.4) 		479.4
(-2.4) 		2259
(3) 		1989

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 702.3
(-0.1)
P 		310.4
(-2.7)
P 		262.2
(-3)
P 		335.2
(-2.5)
P 		306
(-2.7)
P 		1166.1
(3)
P 		904
B 635
(-0.5)
P 		300.4
(-3)
P 		369.4
(-2.5)
P 		430.6
(-2)
P 		311.4
(-2.9)
P 		1102.1
(3)
P 		802
C 583.8
(-1)
P 		291.9
(-3)
P 		364.4
(-2.5)
P 		399.7
(-2.3)
P 		335
(-2.7)
P 		1164.1
(3)
P 		872
avr 640.4
(-0.6) 		300.9
(-3) 		332
(-2.8) 		388.5
(-2.4) 		317.5
(-2.9) 		1144.1
(3) 		843
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 88.9
(-3)
P 		114.9
(-2.4)
P 		123.3
(-2.1)
P 		330.2
(3)
P 		241
B 98.2
(-2.9)
P 		94
(-3)
P 		118.6
(-2.6)
P 		484.5
(3)
P 		391
C 85.6
(-3)
P 		129.4
(-2.1)
P 		158.5
(-1.5)
P 		378.9
(3)
P 		293
avr 90.9
(-3) 		112.8
(-2.6) 		133.5
(-2.2) 		397.9
(3) 		307

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 129.5
(-1.1)
P 		110.4
(-1.6)
P 		57.1
(-3)
P 		85
(-2.3)
P 		92.4
(-2.1)
P 		283.9
(3)
P 		227
B 221
(-0.5)
P 		100
(-2.8)
P 		89.7
(-3)
P 		114
(-2.5)
P 		126.5
(-2.3)
P 		411
(3)
P 		321
C 216.4
(-0.4)
P 		89.1
(-2.8)
P 		92.8
(-2.8)
P 		80.4
(-3)
P 		108.4
(-2.5)
P 		389.7
(3)
P 		309
avr 189
(-0.7) 		99.8
(-2.6) 		79.9
(-3) 		93.1
(-2.7) 		109.1
(-2.4) 		361.5
(3) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9462
Sequence Type Exemplar sequence
Representative Public ID ZK550.2 NCBI
Target Description ZK550.2 /REP_DB=WormBase Gene ID /WP=CE16733 /TR=O62511 /GB=CAB05312.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070657 NCBI Caenorhabditis elegans ZK550.2 (ZK550.2) mRNA, complete cds. 11/11 None
SNAP00000029244 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17245553:17249527:1 11/11 None
GENEFINDER00000029250 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17245553:17249527:1 11/11 None
ZK550.2 ENSEMBL cdna:known chromosome:CEL140:IV:17245553:17249699:1 gene:ZK550.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17245558-17249533(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK550.2
Entrez Gene 191349 Entrez gene
SwissProt O62511 EMBL-EBI
WormBase CE16733 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1626645_AT dm
DROSGENOME1:152873_AT dm
CHICKEN:GGAAFFX.23163.3.S1_S_AT similar to hypothetical protein MGC33302 gga
HU35KSUBA:RC_AA282886_AT hypothetical protein MGC33302 hs
U133_X3P:HS.14877.0.A1_3P_AT hypothetical protein MGC33302 hs
HG-U133_PLUS_2:229509_AT hypothetical protein MGC33302 hs
HG-U133B:229509_AT hypothetical protein MGC33302 hs
HG-U95B:47894_AT hypothetical protein MGC33302 hs
HG-U95C:57186_AT Hypothetical protein MGC33302 hs
HU35KSUBA:RC_AA463502_AT Hypothetical protein MGC33302 hs
HU35KSUBC:RC_AA252163_AT Hypothetical protein MGC33302 hs
U133_X3P:HS.230154.0.A1_3P_AT Hypothetical protein MGC33302 hs
U133_X3P:HS.160690.0.A1_3P_AT Hypothetical protein MGC33302 hs
HG-U133_PLUS_2:228282_AT Hypothetical protein MGC33302 hs
HG-U133B:228282_AT Hypothetical protein MGC33302 hs
HG-U133_PLUS_2:243407_AT Hypothetical protein MGC33302 hs
HG-U133B:243407_AT Hypothetical protein MGC33302 hs
HG-U95C:65074_AT Hypothetical protein MGC33302 hs
HU35KSUBC:RC_AA148530_AT Hypothetical protein MGC33302 hs
MOE430A:1452335_AT RIKEN cDNA 2810423E13 gene mm
MOUSE430A_2:1452335_AT RIKEN cDNA 2810423E13 gene mm
MOUSE430_2:1452335_AT RIKEN cDNA 2810423E13 gene mm
MG-U74BV2:116088_AT RIKEN cDNA 2810423E13 gene mm
MG-U74CV2:166699_I_AT RIKEN cDNA 2810423E13 gene mm
MOE430B:1438497_AT RIKEN cDNA 2810423E13 gene mm
MOUSE430_2:1438497_AT RIKEN cDNA 2810423E13 gene mm
MU19KSUBB:TC30763_AT RIKEN cDNA 2810423E13 gene (2810423E13Rik), mRNA mm
Protein Similarities
Method ID Description E-Value
blast CAB05312 Hypothetical protein ZK550.2 [Caenorhabditis elegans] ref|NP_503058.1| ZK550.2 [Caenorhabditis elegans] 0.0
blast CAE57409 Hypothetical protein CBG00364 [Caenorhabditis briggsae] 0.0
blast AAB66157 Hypothetical protein T28C12.2 [Caenorhabditis elegans] ref|NP_504616.1| T28C12.2 [Caenorhabditis elegans] 1.0E-168
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503058.1 12 37-59,74-96,108-125,135-157,169-191,211-230,257-279,299-321,334-353,386-408,429-448,458-480
ZK550.2 12 37-59,74-96,108-125,135-157,169-191,211-230,257-279,299-321,334-353,386-408,429-448,458-480
SNAP00000029244 12 37-59,74-96,108-125,135-157,169-191,211-230,257-279,299-321,334-353,386-408,429-448,458-480
GENEFINDER00000029250 12 37-59,74-96,108-125,135-157,169-191,211-230,257-279,299-321,334-353,386-408,429-448,458-480
Sequence
Target Sequence 
>C. ELEGANS:179513_AT
cggattgggtgtattcgtcgcattccacgtggtcaactatccatggtggttctactcggg
acctctgcactttttgccgccaggttccaacacaactattgtcggtggatgccttgattc
atattcatggtgcaacacgacaactcgtgtccctatggctctctacatttttgcatttgt
cttctttttcggaatcgctttcccatttgtcgagtcaccggccgccgcactttattcaga
gattttgggtccacggaagcagggaaccatgcagggattgttcagttttggtggaagtat
cacgccatttgttgcttcgattattatcacattcctattccaacattccggctacaaata
cgtcatcatcctacagtcaaccacaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGATTGGGTGTATTCGTCGCATTC 461 241 1020 Antisense
GCATTCCACGTGGTCAACTATCCAT 64 307 1039 Antisense
ACTATCCATGGTGGTTCTACTCGGG 605 101 1055 Antisense
GCCAGGTTCCAACACAACTATTGTC 547 275 1098 Antisense
ATTGTCGGTGGATGCCTTGATTCAT 371 3 1117 Antisense
CCTATGGCTCTCTACATTTTTGCAT 270 269 1171 Antisense
TGTCTTCTTTTTCGGAATCGCTTTC 44 559 1197 Antisense
GTATCACGCCATTTGTTGCTTCGAT 256 453 1316 Antisense
CACATTCCTATTCCAACATTCCGGC 39 197 1347 Antisense
TCCGGCTACAAATACGTCATCATCC 505 593 1366 Antisense
CATCATCCTACAGTCAACCACAATT 506 213 1383 Antisense
Sequence Source Affymetrix Proprietary Database