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[179512_at]

Description K10G4.5 /REP_DB=WormBase Gene ID /WP=CE16248 /TR=O45671 /GB=CAB07255.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 10      6grp_cgc > 75      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 41.1
(-1.4)
A 		29
(-3)
A 		29.3
(-3)
A 		73.3
(3)
A 		44
B 42
(-2.2)
A 		38.9
(-3)
A 		63.4
(3)
A 		51.3
(0)
A 		25
C 14.2
(-2)
A 		42.3
(0.9)
A 		3.9
(-3)
A 		63.6
(3)
A 		60
avr 32.4
(-3) 		36.7
(-2.1) 		32.2
(-3) 		62.7
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 9.3
(-3)
A 		20
(-1.2)
A 		44.4
(3)
A 		23.7
(-0.5)
A 		41.3
(2.5)
A 		38.3
(2)
A 		35
B 47
(1.3)
A 		47
(1.3)
A 		42.4
(0.5)
A 		56.4
(3)
A 		28.3
(-2.1)
A 		23.2
(-3)
A 		33
C 10.3
(-3)
A 		38.2
(-0.2)
A 		25.9
(-1.4)
A 		69.3
(3)
A 		10.8
(-2.9)
A 		30.3
(-1)
A 		59
avr 22.2
(-3) 		35.1
(-0.2) 		37.6
(0.3) 		49.8
(3) 		26.8
(-2) 		30.6
(-1.2) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 15
(3)
A 		6.3
(-3)
A 		7.7
(-2)
A 		10.7
(0)
A 		9
B 13.4
(1.5)
A 		9.6
(-3)
A 		14.7
(3)
A 		10.9
(-1.5)
A 		5
C 4.7
(-1.2)
A 		12.2
(3)
A 		1.4
(-3)
A 		10.7
(2.2)
A 		11
avr 11
(3) 		9.4
(-0.1) 		7.9
(-3) 		10.8
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 1.7
(-3)
A 		7.1
(-0)
A 		9.7
(1.4)
A 		6
(-0.6)
A 		12.5
(3)
A 		9.3
(1.2)
A 		11
B 16.4
(3)
A 		15.6
(2.4)
A 		10.3
(-1.7)
A 		14.9
(1.8)
A 		11.5
(-0.8)
A 		8.6
(-3)
A 		8
C 3.8
(-2.8)
A 		11.7
(1.7)
A 		6.6
(-1.2)
A 		13.9
(3)
A 		3.5
(-3)
A 		10.1
(0.8)
A 		10
avr 7.3
(-3) 		11.5
(2.9) 		8.9
(-0.8) 		11.6
(3) 		9.2
(-0.3) 		9.3
(-0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13141
Sequence Type Exemplar sequence
Representative Public ID K10G4.5 NCBI
Target Description K10G4.5 /REP_DB=WormBase Gene ID /WP=CE16248 /TR=O45671 /GB=CAB07255.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074978
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074978 NCBI Caenorhabditis elegans K10G4.5 (K10G4.5) mRNA, complete cds. None
K10G4.5 ENSEMBL cdna:known chromosome:CEL140:V:17297290:17304115:-1 gene:K10G4.5 None
GENEFINDER00000034119 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17300918:17304052:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034112 2/11 Cross Hyb Matching Probes None
SNAP00000034113 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034117 2/11 Cross Hyb Matching Probes None
GENEFINDER00000034121 8/11 Cross Hyb Matching Probes None
K10G4.8 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17295558-17304115(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K10G4.5
Entrez Gene 180143 Entrez gene
SwissProt O45671 EMBL-EBI
WormBase CE34930 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07255 Hypothetical protein K10G4.5 [Caenorhabditis elegans] ref|NP_507379.2| K10G4.5 [Caenorhabditis elegans] 0.0
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 0.0
blast CAB04362 Hypothetical protein F40D4.12 [Caenorhabditis elegans] ref|NP_507340.1| F40D4.12 [Caenorhabditis elegans] 1.0E-180
blast CAB03900 Hypothetical protein C18D4.2 [Caenorhabditis elegans] ref|NP_507438.1| C18D4.2 [Caenorhabditis elegans] 7.0E-78
blast CAB03900 Hypothetical protein C18D4.2 [Caenorhabditis elegans] ref|NP_507438.1| C18D4.2 [Caenorhabditis elegans] 1.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-35
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 2.0E-20
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-4
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.5E-35
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-4
Sequence
Target Sequence 
>C. ELEGANS:179512_AT
tgataatagtgataccccttgctcctggattgaaccattagaaatcgatgaaatctgcca
gtcgaagcagtggaaaaatgcacgtttcattgaaatagaacacacaattgctcccactga
catgaaaaactttggacatttctccgagcatcggtttcacaaaaagttaagtcacaaatt
ttttttaaaacgattttcaatcaatttcaaattttttcttggatatgcaagtttcgtgat
cgctatcttcggattattcggcaacattttccatttagcagtgctcacacggaaatctat
gagaaactcttcagtaactgtattcctaattggaattgcaatttgtgatctcgttcgaat
gattggcacagttttctcaaatttacaaatgttttatgaagagtttgtattgcttaatac
tccagagaattgtgtggctccaaaatcctatctggaaatgttaattcttctaacttttag
ttcattagaaatgattgcatcggacttgccagtttggtttgcagtttttatgacaatctt
tcgtgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATAATAGTGATACCCCTTGCTCC 635 563 3582 Antisense
ACAATTGCTCCCACTGACATGAAAA 640 113 3685 Antisense
ACATTTCTCCGAGCATCGGTTTCAC 318 105 3717 Antisense
GCAAGTTTCGTGATCGCTATCTTCG 667 319 3808 Antisense
GCTATCTTCGGATTATTCGGCAACA 579 303 3823 Antisense
TTCGGCAACATTTTCCATTTAGCAG 173 695 3838 Antisense
ATTTAGCAGTGCTCACACGGAAATC 593 13 3854 Antisense
GATCTCGTTCGAATGATTGGCACAG 576 417 3928 Antisense
TGTGTGGCTCCAAAATCCTATCTGG 266 555 4012 Antisense
GATTGCATCGGACTTGCCAGTTTGG 102 435 4074 Antisense
GTTTTTATGACAATCTTTCGTGCTC 399 449 4105 Antisense
Sequence Source Affymetrix Proprietary Database