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[179511_at]

Description F20G2.5 /REP_DB=WormBase Gene ID /WP=CE09508 /TR=Q93543 /GB=CAB02085.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_high_8_8 > 49      6grp_total > 07      4grp_total > 61      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 390
1 2 3 4 range
A 330.6
(2)
P 		388
(3)
P 		292.7
(1.3)
P 		56.5
(-3)
A 		332
B 355.3
(3)
P 		210.2
(0.3)
P 		282
(1.6)
P 		30.7
(-3)
A 		325
C 420.3
(3)
P 		219.4
(-1.8)
P 		306.2
(0.3)
P 		169.7
(-3)
P 		251
avr 368.7
(3) 		272.5
(1) 		293.6
(1.4) 		85.6
(-3) 		283

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 434.3
(3)
P 		201.9
(-1.3)
P 		174.8
(-1.8)
P 		237.4
(-0.6)
P 		109.8
(-3)
P 		225.3
(-0.9)
P 		325
B 407
(3)
P 		272.2
(0.5)
P 		185.1
(-1.1)
P 		240.7
(-0.1)
P 		85.6
(-3)
P 		244.8
(-0)
P 		321
C 295.2
(3)
P 		259.8
(2)
P 		249
(1.7)
P 		144.2
(-1.1)
P 		73.9
(-3)
A 		255.6
(1.9)
P 		221
avr 378.8
(3) 		244.6
(0.2) 		203
(-0.6) 		207.4
(-0.6) 		89.8
(-3) 		241.9
(0.2) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 120.4
(3)
P 		84.2
(1.1)
P 		76.5
(0.7)
P 		8.3
(-3)
A 		112
B 113.3
(3)
P 		51.9
(-0.4)
P 		65.4
(0.3)
P 		6.5
(-3)
A 		107
C 139.1
(3)
P 		63.1
(-1.1)
P 		106.7
(1.2)
P 		28.6
(-3)
P 		111
avr 124.3
(3) 		66.4
(-0.2) 		82.9
(0.7) 		14.5
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 80.1
(3)
P 		71.8
(1.9)
P 		38.1
(-2.4)
P 		60.2
(0.5)
P 		33.1
(-3)
P 		54.8
(-0.2)
P 		47
B 141.6
(3)
P 		90.6
(0.1)
P 		45
(-2.4)
P 		63.8
(-1.4)
P 		34.8
(-3)
P 		91.3
(0.2)
P 		107
C 109.4
(3)
P 		79.3
(0.9)
P 		63.4
(-0.2)
P 		29
(-2.6)
P 		23.9
(-3)
A 		85.6
(1.3)
P 		86
avr 110.4
(3) 		80.6
(0.8) 		48.8
(-1.6) 		51
(-1.5) 		30.6
(-3) 		77.2
(0.5) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14256
Sequence Type Exemplar sequence
Representative Public ID F20G2.5 NCBI
Target Description F20G2.5 /REP_DB=WormBase Gene ID /WP=CE09508 /TR=Q93543 /GB=CAB02085.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074009(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074009 NCBI Caenorhabditis elegans F20G2.5 (F20G2.5) mRNA, complete cds. 11/11 None
SNAP00000006711 ENSEMBL cdna:SNAP chromosome:CEL140:V:13774184:13776255:1 10/11 None
GENEFINDER00000006718 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13774865:13776231:1 10/11 None
F20G2.5 ENSEMBL cdna:known chromosome:CEL140:V:13774184:13776235:1 gene:F20G2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13774183-13776235(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F20G2.5
Entrez Gene 184745 Entrez gene
SwissProt Q93543 EMBL-EBI
WormBase CE09508 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02085 Hypothetical protein F20G2.5 [Caenorhabditis elegans] ref|NP_506410.1| F20G2.5 [Caenorhabditis elegans] 0.0
blast CAE66246 Hypothetical protein CBG11490 [Caenorhabditis briggsae] 1.0E-110
blast CAB02120 Hypothetical protein F53C11.1 [Caenorhabditis elegans] ref|NP_506411.2| F53C11.1 [Caenorhabditis elegans] 1.0E-107
blast CAB02120 Hypothetical protein F53C11.1 [Caenorhabditis elegans] ref|NP_506411.2| F53C11.1 [Caenorhabditis elegans] 1.0E-105
blast CAE66246 Hypothetical protein CBG11490 [Caenorhabditis briggsae] 1.0E-105
blast CAE66246 Hypothetical protein CBG11490 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 9.2E-17
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.9E-7
Sequence
Target Sequence 
>C. ELEGANS:179511_AT
gatccaattgctcaaagtttgccacaacaaataccaacaaataccttcactgtgataatg
agccagtccacgttcaactttttgctctcttctggcccgtcgagcatttggaatcttgct
cctccaggaagaagaggatggataatatctccatcgctctggaatcctacgactactgct
acggttccctatacatctaatttcacgtctgtggaaaaaattaaattcattttcaacctg
atatccgtggtaattgtggatgaaggagcagaaatgaaaattactatgggatcgccggga
attccaccaaatgttgttgaatttaatcaaactgcagttaatactggttcaagatctgta
tatggaacgtacatgtccacagaatttaccggaagcacggatatttcatcatttcttctg
aattttgaaatagtggttagtttaaaattacatagtttgcggttgaaaactaaattctca
cgatttagggtaatccggcaacagcaactactgctcaactggagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCAATTGCTCAAAGTTTGCCAC 451 415 808 Antisense
TAATGAGCCAGTCCACGTTCAACTT 49 637 863 Antisense
GCCCGTCGAGCATTTGGAATCTTGC 211 287 902 Antisense
GGAATCTTGCTCCTCCAGGAAGAAG 519 533 917 Antisense
TATCTCCATCGCTCTGGAATCCTAC 166 659 953 Antisense
GAATCCTACGACTACTGCTACGGTT 489 329 969 Antisense
TACGGTTCCCTATACATCTAATTTC 103 647 987 Antisense
AATTCATTTTCAACCTGATATCCGT 274 177 1031 Antisense
CTATGGGATCGCCGGGAATTCCACC 236 225 1091 Antisense
AGGGTAATCCGGCAACAGCAACTAC 107 57 1294 Antisense
AGCAACTACTGCTCAACTGGAGACA 78 77 1310 Antisense
Sequence Source Affymetrix Proprietary Database