[Home] | [Total List]

[179510_at]

Description F58H1.2 /REP_DB=WormBase Gene ID /WP=CE06026 /TR=Q21011 /GB=CAB00105.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 71      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 44      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1316
1 2 3 4 range
A 95.4
(-3)
P 		1305.5
(3)
P 		1141.9
(2.2)
P 		155
(-2.7)
P 		1210
B 69.4
(-3)
P 		1259.4
(3)
P 		1211.2
(2.8)
P 		139.9
(-2.6)
P 		1190
C 86.9
(-3)
P 		1385.3
(3)
P 		1170.6
(2)
P 		230.4
(-2.3)
P 		1298
avr 83.9
(-3) 		1316.7
(3) 		1174.6
(2.3) 		175.1
(-2.6) 		1233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2436
1 2 3 4 5 6 range
A 508.7
(-3)
P 		1617.6
(-0)
P 		1383.4
(-0.6)
P 		2737.2
(3)
P 		1485.7
(-0.4)
P 		518.2
(-3)
P 		2229
B 420.6
(-3)
P 		1489.4
(0.7)
P 		1370.4
(0.3)
P 		2142.2
(3)
P 		1650.4
(1.3)
P 		481.1
(-2.8)
P 		1722
C 564.4
(-2.8)
P 		1537.5
(-0.4)
P 		1439.7
(-0.6)
P 		2856.4
(3)
P 		1749.1
(0.2)
P 		498.1
(-3)
P 		2358
avr 497.9
(-3) 		1548.2
(0) 		1397.8
(-0.4) 		2578.6
(3) 		1628.4
(0.3) 		499.1
(-3) 		2081
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 34.7
(-2.7)
P 		283.4
(2.7)
P 		298.5
(3)
P 		22.7
(-3)
P 		276
B 22.1
(-3)
P 		311.1
(3)
P 		280.7
(2.4)
P 		29.8
(-2.8)
P 		289
C 28.8
(-3)
P 		398.3
(2.8)
P 		408
(3)
P 		38.8
(-2.8)
P 		379
avr 28.5
(-3) 		330.9
(3) 		329.1
(3) 		30.4
(-3) 		302

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 600
1 2 3 4 5 6 range
A 93.8
(-3)
P 		575.3
(1.8)
P 		301.3
(-0.9)
P 		694.2
(3)
P 		448.3
(0.5)
P 		126.2
(-2.7)
P 		600
B 146.4
(-3)
P 		495.8
(1)
P 		332.8
(-0.9)
P 		567.4
(1.8)
P 		670.5
(3)
P 		179.4
(-2.6)
P 		524
C 209.2
(-2.4)
P 		469.1
(1.5)
P 		366.4
(-0.1)
P 		574.4
(3)
P 		566
(2.9)
P 		166.7
(-3)
P 		408
avr 149.8
(-3) 		513.4
(1.7) 		333.5
(-0.6) 		612
(3) 		561.6
(2.3) 		157.4
(-2.9) 		462
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14231
Sequence Type Exemplar sequence
Representative Public ID F58H1.2 NCBI
Target Description F58H1.2 /REP_DB=WormBase Gene ID /WP=CE06026 /TR=Q21011 /GB=CAB00105.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073595(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073595 NCBI Caenorhabditis elegans F58H1.2 (F58H1.2) mRNA, complete cds. 11/11 None
SNAP00000006508 ENSEMBL cdna:SNAP chromosome:CEL140:V:11931693:11932466:1 11/11 None
GENEFINDER00000006520 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11931693:11932466:1 11/11 None
F58H1.2 ENSEMBL cdna:known chromosome:CEL140:V:11931693:11932578:1 gene:F58H1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11931692-11932466(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H1.2
Entrez Gene 179633 Entrez gene
SwissProt Q21011 EMBL-EBI
WormBase CE06026 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB00105 Hypothetical protein F58H1.2 [Caenorhabditis elegans] ref|NP_505996.1| F58H1.2 [Caenorhabditis elegans] 5.0E-68
blast CAE75351 Hypothetical protein CBG23331 [Caenorhabditis briggsae] 5.0E-45
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505996.1 1 4-26
F58H1.2 1 4-26
SNAP00000006508 1 4-26
GENEFINDER00000006520 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:179510_AT
tggtgatgttctatgcagctgcagttattctagctgtatccgcagtttcagccgacccat
ttatttataacgtctactcatcttcgggatctcgttcaggatatggaaatccttatgaac
gtgatgaagtctatattcgtagacccggaatgagcggaagttcattctattctggttcgg
gtaacccaatgatgtcgtccatgggatcaatgagttctatgggaggatttcaaggattac
agggaatgcaaggaattcagagtatccataacatgcaaggaatgcaacagatgccgtatg
gactttctagcagtatgatgggaatggatacgtatggatctaacatgtataagcctcgtt
tcgctgcatctgatatgatgatgggaggtggtcaaccattactactcaatggatatccaa
tgtacccaaaaacttctggatacccaatggtgattccactggccatgggatcctatggat
cttctcctacagtataccagggaccaactgtctctcgtcttccattcagagctactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGTGATGTTCTATGCAGCTGCAGT 335 553 14 Antisense
GTTTCAGCCGACCCATTTATTTATA 169 449 58 Antisense
TATAACGTCTACTCATCTTCGGGAT 49 657 79 Antisense
GTTCATTCTATTCTGGTTCGGGTAA 78 445 173 Antisense
TCGGGTAACCCAATGATGTCGTCCA 403 603 190 Antisense
GATGCCGTATGGACTTTCTAGCAGT 371 415 303 Antisense
ATGTATAAGCCTCGTTTCGCTGCAT 514 47 358 Antisense
TGATTCCACTGGCCATGGGATCCTA 674 561 464 Antisense
ATCCTATGGATCTTCTCCTACAGTA 489 39 483 Antisense
GTATACCAGGGACCAACTGTCTCTC 34 455 505 Antisense
CTCGTCTTCCATTCAGAGCTACTCA 367 233 527 Antisense
Sequence Source Affymetrix Proprietary Database