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[179509_at]

Description C44B9.2 /REP_DB=WormBase Gene ID /WP=CE05404 /TR=Q18603 /GB=CAA97779.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 21
(-1.5)
A 		50.3
(3)
A 		11.5
(-3)
A 		45.6
(2.3)
A 		39
B 14.4
(-3)
A 		82
(3)
A 		47.4
(-0.1)
A 		25.5
(-2)
A 		68
C 37.9
(-1.3)
A 		105.8
(3)
A 		11.9
(-3)
A 		56.6
(-0.1)
A 		94
avr 24.4
(-2.9) 		79.4
(3) 		23.6
(-3) 		42.6
(-1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 21.2
(-2.4)
A 		31.1
(-1.7)
A 		35.1
(-1.4)
A 		13.4
(-3)
A 		47.7
(-0.4)
A 		93.2
(3)
A 		80
B 26.3
(-1.8)
A 		32.1
(-1.3)
A 		12.1
(-3)
A 		81.6
(3)
A 		55.8
(0.8)
A 		55.9
(0.8)
A 		70
C 15.8
(-2.8)
A 		22.6
(-2.5)
A 		27.2
(-2.2)
A 		126.1
(3)
A 		82.7
(0.7)
A 		12.8
(-3)
A 		113
avr 21.1
(-3) 		28.6
(-2.1) 		24.8
(-2.6) 		73.7
(3) 		62.1
(1.7) 		54
(0.8) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 7.7
(0.6)
A 		10.9
(3)
A 		3
(-3)
A 		6.7
(-0.2)
A 		8
B 4.6
(-3)
A 		20.3
(3)
A 		11
(-0.6)
A 		5.4
(-2.7)
A 		16
C 12.6
(-1.1)
A 		30.4
(3)
A 		4.2
(-3)
A 		9.6
(-1.8)
A 		26
avr 8.3
(-2.1) 		20.5
(3) 		6.1
(-3) 		7.2
(-2.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.9
(-2.8)
A 		11.1
(-0.6)
A 		7.6
(-1.7)
A 		3.4
(-3)
A 		14.4
(0.4)
A 		22.7
(3)
A 		19
B 9.1
(-1.1)
A 		10.7
(-0.6)
A 		2.9
(-3)
A 		21.6
(2.7)
A 		22.7
(3)
A 		20.9
(2.5)
A 		20
C 5.9
(-2.6)
A 		6.9
(-2.3)
A 		6.9
(-2.3)
A 		25.4
(2.6)
A 		26.8
(3)
A 		4.3
(-3)
A 		23
avr 6.3
(-2.8) 		9.6
(-1.5) 		5.8
(-3) 		16.8
(1.3) 		21.3
(3) 		16
(0.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6186
Sequence Type Exemplar sequence
Representative Public ID C44B9.2 NCBI
Target Description C44B9.2 /REP_DB=WormBase Gene ID /WP=CE05404 /TR=Q18603 /GB=CAA97779.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066994 NCBI Caenorhabditis elegans C44B9.2 (C44B9.2) mRNA, complete cds. 11/11 None
SNAP00000022573 ENSEMBL cdna:SNAP chromosome:CEL140:III:10869269:10877891:1 11/11 None
GENEFINDER00000022583 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:10875336:10877891:1 11/11 None
C44B9.2 ENSEMBL cdna:known chromosome:CEL140:III:10875336:10877891:1 gene:C44B9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10875331-10877887(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C44B9.2
Entrez Gene 183434 Entrez gene
SwissProt Q18603 EMBL-EBI
WormBase CE05404 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA97779 Hypothetical protein C44B9.2 [Caenorhabditis elegans] ref|NP_499395.1| C44B9.2 [Caenorhabditis elegans] 0.0
blast CAA97778 Hypothetical protein C44B9.1 [Caenorhabditis elegans] ref|NP_499394.2| C44B9.1 [Caenorhabditis elegans] 0.0
blast CAE71390 Hypothetical protein CBG18297 [Caenorhabditis briggsae] 0.0
blast CAE71388 Hypothetical protein CBG18295 [Caenorhabditis briggsae] 1.0E-150
Sequence
Target Sequence 
>C. ELEGANS:179509_AT
caactcgaatggtgccgtctgcagttttcttcacaaatatgcaaagattgtgcatcaaaa
ggagcatgttcactgcaaattcctgaatacaaatgatcgaatggctgtgatgggaccaga
aggaattctattcagtatggactcactcacagaagcctatcttttgagtggagccaaaga
atctggaccttcggcggtggttcttgagaaaccagagtttccgatcatgaatatggatta
taccattcaacaaatgtatggagaatctgatcttggagcaagtaatatggaaaagtgcga
agctgtaatgcagcaagctcaatacgaaaagcacccggatggactcctcactgtgcatat
caacgggatgcttctcaagtacaacactcaatcgggagaggtgaatgtggaggcaaaacc
agtgaagcttaccgtcaatgcgacaactctcacggctcagctcagaagcgcttttattga
tatggctattcaggacaaggacaaatgctacgtgaagcgaggcgagaaacgaattcacac
atcccgctcgggtatggtgatctccgacggcacctgtacaatttccatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTCGAATGGTGCCGTCTGCAGT 643 187 552 Antisense
GTATGGACTCACTCACAGAAGCCTA 447 455 686 Antisense
GAAGCCTATCTTTTGAGTGGAGCCA 187 345 703 Antisense
GCCAAAGAATCTGGACCTTCGGCGG 148 277 724 Antisense
CGAAAAGCACCCGGATGGACTCCTC 57 253 876 Antisense
TGGACTCCTCACTGTGCATATCAAC 699 547 891 Antisense
GCTTACCGTCAATGCGACAACTCTC 78 305 978 Antisense
GGCTCAGCTCAGAAGCGCTTTTATT 514 537 1005 Antisense
GAGAAACGAATTCACACATCCCGCT 264 393 1075 Antisense
CATCCCGCTCGGGTATGGTGATCTC 404 211 1091 Antisense
ACGGCACCTGTACAATTTCCATGGA 259 93 1118 Antisense
Sequence Source Affymetrix Proprietary Database