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[179508_s_at]

Description K08E3.8 /REP_DB=WormBase Gene ID /WP=CE18874 /TR=Q9XUS2 /GB=CAB04600.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 29      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 90      6grp_total > 27      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 178.9
(3)
P 		157.8
(0.5)
P 		128.9
(-3)
P 		135
(-2.3)
P 		50
B 213.1
(3)
P 		157.7
(-0.9)
P 		127.3
(-3)
P 		176.7
(0.5)
P 		86
C 219.7
(3)
P 		130.1
(-3)
P 		195
(1.3)
P 		171.8
(-0.2)
P 		90
avr 203.9
(3) 		148.5
(-3) 		150.4
(-2.8) 		161.2
(-1.6) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 193.2
(2.8)
P 		195
(3)
P 		173.2
(0.8)
P 		149.1
(-1.6)
P 		135.3
(-3)
P 		193.9
(2.9)
P 		60
B 192.6
(1)
P 		224.6
(3)
P 		179.2
(0.2)
P 		127.4
(-3)
P 		184.3
(0.5)
P 		159.5
(-1)
P 		97
C 188.8
(3)
P 		160.1
(0.6)
P 		116
(-3)
P 		131.8
(-1.7)
P 		180.1
(2.3)
P 		174.8
(1.8)
P 		73
avr 191.5
(2.8) 		193.2
(3) 		156.1
(-0.9) 		136.1
(-3) 		166.6
(0.2) 		176.1
(1.2) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 65.1
(3)
P 		34.3
(-1.1)
P 		33.7
(-1.2)
P 		19.8
(-3)
P 		45
B 68
(3)
P 		38.9
(-1.5)
P 		29.5
(-3)
P 		37.7
(-1.7)
P 		39
C 72.7
(3)
P 		37.4
(-1.8)
P 		68
(2.4)
P 		29
(-3)
P 		44
avr 68.6
(3) 		36.9
(-1.8) 		43.7
(-0.8) 		28.8
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 35.6
(-3)
P 		69.4
(3)
P 		37.7
(-2.6)
P 		37.8
(-2.6)
P 		40.8
(-2.1)
P 		47.2
(-0.9)
P 		34
B 67
(1.8)
P 		74.8
(3)
P 		43.5
(-1.6)
P 		33.7
(-3)
P 		74.9
(3)
P 		59.5
(0.8)
P 		41
C 70
(3)
P 		48.9
(0.1)
P 		29.5
(-2.6)
P 		26.5
(-3)
P 		58.3
(1.4)
P 		58.5
(1.4)
P 		44
avr 57.5
(1.7) 		64.4
(3) 		36.9
(-2.2) 		32.7
(-3) 		58
(1.8) 		55.1
(1.2) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6945
Sequence Type Exemplar sequence
Representative Public ID K08E3.8 NCBI
Target Description K08E3.8 /REP_DB=WormBase Gene ID /WP=CE18874 /TR=Q9XUS2 /GB=CAB04600.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067446 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-29) (mdt-29) mRNA, complete cds. 11/11 A 
GENEFINDER00000031970 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13771047:13778175:1 11/11 None
SNAP00000031968 ENSEMBL cdna:SNAP chromosome:CEL140:III:13772986:13778175:1 11/11 None
K08E3.8.2 ENSEMBL cdna:known chromosome:CEL140:III:13772970:13778412:1 gene:K08E3.8 11/11 None
K08E3.8.1 ENSEMBL cdna:known chromosome:CEL140:III:13772972:13778412:1 gene:K08E3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:13772981-13778171(+) 93.14 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-29
Ensembl K08E3.8
Entrez Gene 176817 Entrez gene
SwissProt Q9XUS2 EMBL-EBI
WormBase CE18874 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04600 Hypothetical protein K08E3.8 [Caenorhabditis elegans] ref|NP_499847.1| MeDiaTor family member (mdt-29) [Caenorhabditis elegans] 0.0
blast CAB04599 Hypothetical protein K08E3.7 [Caenorhabditis elegans] ref|NP_499846.2| Parkinson's Disease Related family member (pdr-1) [Caenorhabditis elegans] 1.0E-157
blast CAE71359 Hypothetical protein CBG18262 [Caenorhabditis briggsae] 1.0E-129
blast CAE71358 Hypothetical protein CBG18261 [Caenorhabditis briggsae] 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:179508_S_AT
aaagctcagtacagcagagccacgaacgattttcatgcggtttgcgatgaaattgaccgt
actttgacgacagtattggagacagcgaaacaattgagcaaacttgacaaagtgttcttt
gatcggagctctcgagatctcgacggggaggttatggtcaattctgtgcagaattttgtg
gataatactgaaattgtacaaagaatgttcgacgacacaattggaagtgtgacgtcttca
atggaaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCTCAGTACAGCAGAGCCACGA 590 123 1024 Antisense
GAGCCACGAACGATTTTCATGCGGT 248 385 1040 Antisense
GAACGATTTTCATGCGGTTTGCGAT 483 347 1047 Antisense
GAAATTGACCGTACTTTGACGACAG 453 363 1072 Antisense
TTGACGACAGTATTGGAGACAGCGA 183 703 1087 Antisense
GACAGCGAAACAATTGAGCAAACTT 120 369 1104 Antisense
AAAGTGTTCTTTGATCGGAGCTCTC 170 121 1132 Antisense
TGATCGGAGCTCTCGAGATCTCGAC 319 565 1143 Antisense
GATCTCGACGGGGAGGTTATGGTCA 236 419 1159 Antisense
AAGAATGTTCGACGACACAATTGGA 198 153 1224 Antisense
AAGTGTGACGTCTTCAATGGAAAGT 275 157 1248 Antisense
Sequence Source Affymetrix Proprietary Database