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[179507_at]

Description F36D1.5 /REP_DB=WormBase Gene ID /WP=CE18666 /TR=Q9XV39 /GB=CAB04308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 02      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1058
1 2 3 4 range
A 24.8
(-3)
A 		73.9
(-2.6)
A 		36.1
(-2.9)
A 		738.2
(3)
P 		713
B 12.5
(-3)
A 		41.7
(-2.8)
A 		28.2
(-2.9)
A 		1070.1
(3)
P 		1058
C 31.9
(-3)
P 		60.4
(-2.8)
A 		29.2
(-3)
A 		940.9
(3)
P 		912
avr 23.1
(-3) 		58.7
(-2.8) 		31.2
(-2.9) 		916.4
(3) 		893

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 26.4
(-2.9)
A 		30.2
(-2.4)
P 		43
(-0.7)
M 		25.5
(-3)
A 		72
(3)
A 		69.7
(2.7)
P 		47
B 61.9
(1.6)
A 		18.2
(-3)
A 		58.5
(1.3)
A 		63
(1.7)
A 		70.8
(2.6)
A 		74.8
(3)
P 		57
C 34.7
(0.1)
A 		47
(1.4)
A 		4.1
(-3)
A 		15
(-1.9)
A 		58.7
(2.6)
P 		62.4
(3)
P 		58
avr 41
(-1.5) 		31.8
(-3) 		35.2
(-2.5) 		34.5
(-2.6) 		67.2
(2.7) 		69
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 9
(-3)
A 		16
(-2.6)
A 		9.4
(-3)
A 		108.1
(3)
P 		99
B 4
(-3)
A 		10.3
(-2.8)
A 		6.5
(-2.9)
A 		228
(3)
P 		224
C 10.6
(-3)
P 		17.4
(-2.7)
A 		10.2
(-3)
A 		158.6
(3)
P 		148
avr 7.9
(-3) 		14.6
(-2.7) 		8.7
(-3) 		164.9
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.9
(-3)
A 		10.7
(-0.9)
P 		9.4
(-1.4)
M 		6.5
(-2.4)
A 		21.7
(3)
A 		17
(1.3)
P 		17
B 21.5
(1.1)
A 		6
(-3)
A 		14.2
(-0.8)
A 		16.7
(-0.2)
A 		28.7
(3)
A 		27.9
(2.8)
P 		23
C 12.9
(0.6)
A 		14.3
(1)
A 		1.1
(-3)
A 		3
(-2.4)
A 		19
(2.4)
P 		20.9
(3)
P 		20
avr 13.1
(-1) 		10.3
(-2.2) 		8.2
(-3) 		8.7
(-2.8) 		23.1
(3) 		21.9
(2.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179507_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1536
Sequence Type Exemplar sequence
Representative Public ID F36D1.5 NCBI
Target Description F36D1.5 /REP_DB=WormBase Gene ID /WP=CE18666 /TR=Q9XV39 /GB=CAB04308.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060492
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060492 NCBI Caenorhabditis elegans F36D1.5 (F36D1.5) mRNA, complete cds. None
F36D1.5 ENSEMBL cdna:known chromosome:CEL140:I:11274194:11274558:1 gene:F36D1.5 None
GENEFINDER00000013628 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11274194:11274558:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013621 7/11 Cross Hyb Matching Probes None
GENEFINDER00000013627 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11274124-11274489(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36D1.5
Entrez Gene 185347 Entrez gene
SwissProt Q9XV39 EMBL-EBI
WormBase CE34305 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04308 Hypothetical protein F36D1.5 [Caenorhabditis elegans] ref|NP_492893.2| F36D1.5 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179507_AT
atgaatttctacttcctattcgttttcctagccatttttgcttgggctggaaacaccgac
gctaccgagactgccgtaggtggtactgaggtgagtttgcagtttgtagtcttaaagtta
acagacaattttcagaccaagccaaaaccgccagcaactggaacagctggggagcacaaa
aaaggaaaaggagcaaaaaatcacaagaaaggagccgggggcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATTTCTACTTCCTATTCGTTT 102 45 13 Antisense
CTATTCGTTTTCCTAGCCATTTTTG 202 223 28 Antisense
TTTTCCTAGCCATTTTTGCTTGGGC 210 677 35 Antisense
TTGCTTGGGCTGGAAACACCGACGC 321 703 50 Antisense
CGCTACCGAGACTGCCGTAGGTGGT 325 229 72 Antisense
GACTGCCGTAGGTGGTACTGAGGTG 372 375 81 Antisense
GGTGAGTTTGCAGTTTGTAGTCTTA 195 501 102 Antisense
AACAGACAATTTTCAGACCAAGCCA 405 135 132 Antisense
AGCCAAAACCGCCAGCAACTGGAAC 437 69 152 Antisense
AAACCGCCAGCAACTGGAACAGCTG 166 127 157 Antisense
ATCACAAGAAAGGAGCCGGGGGCAA 515 1 212 Antisense
Sequence Source Affymetrix Proprietary Database