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[179506_at]

Description C14A6.6 /REP_DB=WormBase Gene ID /WP=CE18497 /TR=Q9XVE4 /GB=CAB03878.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.8
(-3)
A 		4
(-0.6)
A 		5
(0.2)
A 		8.7
(3)
A 		8
B 1.9
(1.1)
A 		2.4
(3)
A 		0.8
(-3)
A 		2.4
(3)
A 		2
C 0.7
(-3)
A 		18.3
(3)
A 		2.2
(-2.5)
A 		9.6
(0)
A 		18
avr 1.1
(-3) 		8.2
(3) 		2.7
(-1.6) 		6.9
(1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 4.2
(-2.9)
A 		4.2
(-2.9)
A 		18.8
(-0.3)
A 		3.5
(-3)
A 		7.5
(-2.3)
A 		37.1
(3)
A 		34
B 2.9
(-1.9)
A 		0.6
(-3)
A 		2
(-2.3)
A 		0.9
(-2.9)
A 		13.3
(3)
A 		1.7
(-2.5)
A 		13
C 1
(-3)
A 		2.4
(-2.7)
A 		5
(-2)
A 		5.4
(-1.9)
A 		1.9
(-2.8)
A 		25
(3)
A 		24
avr 2.7
(-2.9) 		2.4
(-3) 		8.6
(-1) 		3.3
(-2.7) 		7.6
(-1.3) 		21.3
(3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.3
(-3)
A 		0.9
(0.6)
A 		1.3
(3)
A 		1.3
(3)
A 		1
B 0.6
(3)
A 		0.6
(3)
A 		0.2
(-3)
A 		0.5
(1.5)
A 		0
C 0.2
(-3)
A 		5.3
(3)
A 		0.8
(-2.3)
A 		1.6
(-1.4)
A 		5
avr 0.4
(-3) 		2.3
(3) 		0.8
(-1.7) 		1.1
(-0.8) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.5
(-2.5)
A 		4.1
(-0.6)
A 		0.9
(-2.9)
A 		2.3
(-1.9)
A 		9
(3)
A 		8
B 1
(-2.1)
A 		0.2
(-3)
A 		0.5
(-2.7)
A 		0.2
(-3)
A 		5.4
(3)
A 		0.6
(-2.5)
A 		5
C 0.4
(-3)
A 		0.7
(-2.8)
A 		1.3
(-2.3)
A 		1.1
(-2.5)
A 		0.6
(-2.9)
A 		8.4
(3)
A 		8
avr 0.7
(-3) 		0.8
(-2.9) 		2
(-1.5) 		0.7
(-3) 		2.8
(-0.6) 		6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179506_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14261
Sequence Type Exemplar sequence
Representative Public ID C14A6.6 NCBI
Target Description C14A6.6 /REP_DB=WormBase Gene ID /WP=CE18497 /TR=Q9XVE4 /GB=CAB03878.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075148(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075148 NCBI Caenorhabditis elegans C14A6.6 (C14A6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000009401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18167898:18170940:-1 11/11 None
C14A6.6 ENSEMBL cdna:known chromosome:CEL140:V:18167898:18169805:-1 gene:C14A6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000009397 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18167897-18169805(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C14A6.6
Entrez Gene 182587 Entrez gene
SwissProt Q9XVE4 EMBL-EBI
WormBase CE18497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03878 Hypothetical protein C14A6.6 [Caenorhabditis elegans] ref|NP_507549.1| C14A6.6 [Caenorhabditis elegans] 1.0E-100
blast CAB04913 Hypothetical protein W04E12.4 [Caenorhabditis elegans] ref|NP_507827.2| W04E12.4 [Caenorhabditis elegans] 3.0E-72
blast CAB04913 Hypothetical protein W04E12.4 [Caenorhabditis elegans] ref|NP_507827.2| W04E12.4 [Caenorhabditis elegans] 5.0E-72
blast CAB03884 Hypothetical protein C14A6.7 [Caenorhabditis elegans] ref|NP_507550.1| C14A6.7 [Caenorhabditis elegans] 3.0E-29
blast CAB03879 Hypothetical protein C14A6.5 [Caenorhabditis elegans] ref|NP_507548.1| C14A6.5 [Caenorhabditis elegans] 6.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507549.1 1 187-209
C14A6.6 1 187-209
GENEFINDER00000009401 1 283-305
Sequence
Target Sequence 
>C. ELEGANS:179506_AT
atgagacttggggcgatattataaaagagctgagagaaaattctgaacactggatggata
cgactttaccaaaagccgaacagcgaagaaattttgagaagatggaggagcttttgagaa
gaagtgatatgtgccgggagagacaaaaggcgatggttcaaaaactgaaaaatctggaaa
aacttgtggaggaagacgaaaatggcgcggaattttcaccggaagatcaagagatgctat
cgatgctgaaattggatcaaaatgctcatcaagcaattttgaatcttcgcaactcggatt
tggagggtcttgacccggaagttaaggaaacaattatgtatttcagaaagatcgagatgg
tagacgagatactcggcaatattacggatgattctgataatgacgcaaacgccaaaaaca
gcaccacttctgagcctgaaattgaagatgacaccgactcggaacgtggatcggaaattt
tcgagactgatgaaatggatgacgtcactacttctccacttacgacgttcttcattgctc
cacttttcctcgcacttcttctgtacttggcgtcaatcaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGACTTGGGGCGATATTATAAA 137 45 53 Antisense
AATTCTGAACACTGGATGGATACGA 446 173 91 Antisense
CGACTTTACCAAAAGCCGAACAGCG 615 249 113 Antisense
GAGAAGAAGTGATATGTGCCGGGAG 677 391 168 Antisense
GAGAGACAAAAGGCGATGGTTCAAA 392 389 190 Antisense
AATGGCGCGGAATTTTCACCGGAAG 563 161 253 Antisense
GACGAGATACTCGGCAATATTACGG 438 379 415 Antisense
ACACCGACTCGGAACGTGGATCGGA 408 99 503 Antisense
GTGGATCGGAAATTTTCGAGACTGA 658 489 518 Antisense
CCACTTACGACGTTCTTCATTGCTC 261 275 568 Antisense
CTTCTGTACTTGGCGTCAATCAATT 529 219 610 Antisense
Sequence Source Affymetrix Proprietary Database