[Home] | [Total List]

[179503_at]

Description C18D4.4 /REP_DB=WormBase Gene ID /WP=CE15634 /TR=O45262 /GB=CAB03902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 36
(-0.8)
A 		8
(-3)
A 		33.3
(-1)
A 		83.8
(3)
A 		76
B 34.8
(-2.8)
A 		36.9
(-2.5)
A 		32.7
(-3)
A 		86.7
(3)
A 		54
C 31.7
(-1.5)
A 		8.9
(-3)
A 		22.8
(-2.1)
A 		102
(3)
A 		93
avr 34.2
(-1.7) 		17.9
(-3) 		29.6
(-2) 		90.8
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 45.5
(-2.3)
A 		32.5
(-3)
A 		138
(3)
A 		123.6
(2.2)
A 		132.3
(2.7)
A 		83.5
(-0.1)
A 		106
B 22.1
(-2.4)
A 		39.1
(-1.5)
A 		88.6
(0.9)
A 		97.8
(1.4)
A 		130.2
(3)
P 		9.2
(-3)
A 		121
C 32.7
(-3)
A 		71.7
(0.7)
A 		68.9
(0.5)
A 		71.6
(0.7)
A 		95.4
(3)
A 		63.9
(-0)
A 		63
avr 33.4
(-3) 		47.8
(-2) 		98.5
(1.5) 		97.7
(1.5) 		119.3
(3) 		52.2
(-1.7) 		86
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.1
(3)
A 		1.7
(-3)
A 		8.7
(0.7)
A 		12.3
(2.6)
A 		11
B 11.1
(-1.1)
A 		9.1
(-2.2)
A 		7.6
(-3)
A 		18.5
(3)
A 		11
C 10.5
(0.3)
A 		2.5
(-3)
A 		7.9
(-0.8)
A 		17.2
(3)
A 		15
avr 11.6
(0.7) 		4.4
(-3) 		8.1
(-1.1) 		16
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 8.4
(-3)
A 		11.6
(-2.4)
A 		30
(1.1)
A 		31.4
(1.4)
A 		39.9
(3)
A 		20.3
(-0.7)
A 		32
B 7.7
(-2.5)
A 		13
(-1.8)
A 		21.5
(-0.8)
A 		25.9
(-0.3)
A 		52.9
(3)
P 		3.4
(-3)
A 		50
C 12.1
(-3)
A 		21.9
(0.1)
A 		17.5
(-1.3)
A 		14.4
(-2.3)
A 		30.9
(3)
A 		21.4
(-0)
A 		19
avr 9.4
(-3) 		15.5
(-1.8) 		23
(-0.4) 		23.9
(-0.3) 		41.2
(3) 		15
(-1.9) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14320
Sequence Type Exemplar sequence
Representative Public ID C18D4.4 NCBI
Target Description C18D4.4 /REP_DB=WormBase Gene ID /WP=CE15634 /TR=O45262 /GB=CAB03902.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075039 NCBI Caenorhabditis elegans C18D4.4 (C18D4.4) mRNA, complete cds. 11/11 None
GENEFINDER00000019859 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17533079:17534086:-1 11/11 None
C18D4.4 ENSEMBL cdna:known chromosome:CEL140:V:17533079:17534086:-1 gene:C18D4.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019850 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17533078-17534086(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18D4.4
Entrez Gene 182784 Entrez gene
SwissProt O45262 EMBL-EBI
WormBase CE15634 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03902 Hypothetical protein C18D4.4 [Caenorhabditis elegans] ref|NP_507440.1| C18D4.4 [Caenorhabditis elegans] 4.0E-68
blast CAA16429 Hypothetical protein Y61B8B.2 [Caenorhabditis elegans] ref|NP_507381.2| Y61B8B.2 [Caenorhabditis elegans] 2.0E-31
blast CAA20998 Hypothetical protein Y38H6C.19 [Caenorhabditis elegans] ref|NP_507963.1| Y38H6C.19 [Caenorhabditis elegans] 8.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 4.3E-25
Sequence
Target Sequence 
>C. ELEGANS:179503_AT
atgaacacatcatggttgtttctggctatcaccatctcagtgttgcccttaattcaatgc
aggcatgtactttacttgggctctccacgtgtaaacaatcaaggaacatggaaagcgtgg
caaatatgccacgatgggtggtttgtacatggaatgcagttgaaatatgaggctaccgga
ggtgatctaactggaatgaacgcagttgcattgtactgtcaacgtattggattggtttca
acaaagaccattcttgctctggttgagaatgagatgatggtgagactgtgggcactcgac
tgtacaatttgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAACACATCATGGTTGTTTCTGG 571 43 19 Antisense
TGGCTATCACCATCTCAGTGTTGCC 153 545 41 Antisense
CATCTCAGTGTTGCCCTTAATTCAA 147 213 51 Antisense
GCAGGCATGTACTTTACTTGGGCTC 633 309 77 Antisense
TTTACTTGGGCTCTCCACGTGTAAA 450 661 89 Antisense
CCACGATGGGTGGTTTGTACATGGA 67 275 147 Antisense
GAGGCTACCGGAGGTGATCTAACTG 41 405 187 Antisense
GTACTGTCAACGTATTGGATTGGTT 608 457 231 Antisense
CAAAGACCATTCTTGCTCTGGTTGA 348 193 260 Antisense
GATGGTGAGACTGTGGGCACTCGAC 44 409 294 Antisense
TGGGCACTCGACTGTACAATTTGGA 517 553 307 Antisense
Sequence Source Affymetrix Proprietary Database