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[179501_at]

Description B0462.3 /REP_DB=WormBase Gene ID /WP=CE15556 /TR=O45224 /GB=CAB03811.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 19      6grp_total > 67      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 19.4
(-3)
A 		47.2
(0.7)
A 		23.5
(-2.5)
A 		64.5
(3)
A 		45
B 23.1
(-1.9)
A 		19.4
(-3)
A 		38.9
(3)
A 		31.4
(0.7)
P 		20
C 51.1
(-0.3)
P 		40.4
(-1.4)
P 		25.2
(-3)
P 		82.1
(3)
P 		57
avr 31.2
(-2.6) 		35.7
(-1.7) 		29.2
(-3) 		59.3
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 53.6
(-0.3)
A 		29.8
(-2.4)
A 		23.2
(-3)
P 		37
(-1.8)
A 		34.5
(-2)
M 		91.3
(3)
P 		68
B 16.1
(-1.9)
P 		42
(1.6)
P 		43.9
(1.9)
A 		7.6
(-3)
A 		38.9
(1.2)
P 		52
(3)
P 		44
C 38.2
(-2.4)
P 		46.3
(-0.3)
P 		36
(-3)
P 		47.4
(-0)
A 		41.3
(-1.6)
P 		59
(3)
P 		23
avr 36
(-2.1) 		39.4
(-1.6) 		34.4
(-2.4) 		30.7
(-3) 		38.2
(-1.8) 		67.4
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.1
(-1.7)
A 		10.2
(3)
A 		6.2
(-3)
A 		9.4
(1.8)
A 		4
B 7.4
(0.7)
A 		4.8
(-3)
A 		9
(3)
A 		6.7
(-0.3)
P 		4
C 16.9
(3)
P 		11.6
(-0.9)
P 		8.8
(-3)
P 		13.8
(0.7)
P 		8
avr 10.5
(3) 		8.9
(-0.8) 		8
(-3) 		10
(1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 9.9
(-1.3)
A 		10.6
(-1.1)
A 		5.1
(-3)
P 		9.4
(-1.5)
A 		10.4
(-1.1)
M 		22.2
(3)
P 		17
B 5.6
(-1.8)
P 		14
(1.1)
P 		10.7
(0)
A 		2
(-3)
A 		15.8
(1.8)
P 		19.4
(3)
P 		17
C 14.2
(-0.1)
P 		14.1
(-0.2)
P 		9.2
(-3)
P 		9.5
(-2.8)
A 		13.4
(-0.6)
P 		19.7
(3)
P 		11
avr 9.9
(-1.7) 		12.9
(-0.4) 		8.3
(-2.4) 		7
(-3) 		13.2
(-0.2) 		20.4
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14322
Sequence Type Exemplar sequence
Representative Public ID B0462.3 NCBI
Target Description B0462.3 /REP_DB=WormBase Gene ID /WP=CE15556 /TR=O45224 /GB=CAB03811.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075185(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075185 NCBI Caenorhabditis elegans B0462.3 (B0462.3) mRNA, complete cds. 11/11 None
SNAP00000015779 ENSEMBL cdna:SNAP chromosome:CEL140:V:18321520:18322318:1 11/11 None
B0462.3 ENSEMBL cdna:known chromosome:CEL140:V:18321313:18322318:1 gene:B0462.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18321312-18322318(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0462.3
Entrez Gene 181998 Entrez gene
SwissProt O45224 EMBL-EBI
WormBase CE15556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03811 Hypothetical protein B0462.3 [Caenorhabditis elegans] ref|NP_507586.1| B0462.3 [Caenorhabditis elegans] 1.0E-172
blast CAB03811 Hypothetical protein B0462.3 [Caenorhabditis elegans] ref|NP_507586.1| B0462.3 [Caenorhabditis elegans] 1.0E-132
blast CAB04164 Hypothetical protein F21D9.5 [Caenorhabditis elegans] ref|NP_507744.1| F21D9.5 [Caenorhabditis elegans] 1.0E-21
blast CAB04164 Hypothetical protein F21D9.5 [Caenorhabditis elegans] ref|NP_507744.1| F21D9.5 [Caenorhabditis elegans] 2.0E-21
blast AAA82411 Hypothetical protein W06A11.3 [Caenorhabditis elegans] ref|NP_494717.1| W06A11.3 [Caenorhabditis elegans] 6.0E-16
blast CAB04466 Hypothetical protein F55C9.1 [Caenorhabditis elegans] ref|NP_507750.1| F55C9.1 [Caenorhabditis elegans] 3.0E-14
Sequence
Target Sequence 
>C. ELEGANS:179501_AT
gactatctacttcatttcgaggatgttattattaatccaagaatcaatgtttcttgccat
acttgggatgaaaggtttaatgctgaaaatttgctaaatggcttcattattcaagaattg
gattgccagttccacacgtggaacaaagacctccaaaccgcgttgaacaatgctagaagc
ctaaagtttttcgtgcttttttcatcatattctacacaccatcaagcttttagtatgaac
tttgaaaggttatcagttacattctggagtgacaatctcaatctcaatactttattgatt
tcatcaagcccaattattgaaattctaggaagagatatcaaagaaaatgacataaacttg
ttcataaagcattggatgctcggaattctcaactataatctgaaatacttgaacatagtg
aaagtaaatcagaatttgaatgaagaagcaattcgcatggggattcgatgcgagcaaaag
ccaaaaaccctgaaaaggattttcaagttcaaggatcgatatctgagaacaaaaaatgtt
tacggtggctatgatattcaaagaaacgacggagttcgagcgacgatttctcattcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCTACTTCATTTCGAGGATG 66 373 337 Antisense
ATCAATGTTTCTTGCCATACTTGGG 218 27 379 Antisense
TGGATTGCCAGTTCCACACGTGGAA 42 551 455 Antisense
ACCTCCAAACCGCGTTGAACAATGC 204 35 485 Antisense
AGTTTTTCGTGCTTTTTTCATCATA 377 63 521 Antisense
TTTTCATCATATTCTACACACCATC 46 677 535 Antisense
TATTCTACACACCATCAAGCTTTTA 642 663 544 Antisense
GACAATCTCAATCTCAATACTTTAT 248 365 607 Antisense
GCTCGGAATTCTCAACTATAATCTG 416 299 714 Antisense
GAAGCAATTCGCATGGGGATTCGAT 57 341 781 Antisense
GTTCGAGCGACGATTTCTCATTCAC 206 443 910 Antisense
Sequence Source Affymetrix Proprietary Database