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[179500_at]

Description F55C9.6 /REP_DB=WormBase Gene ID /WP=CE18738 /TR=Q9XUY8 /GB=CAB04474.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 34.6
(-0.9)
A 		5.9
(-3)
A 		46.6
(-0)
A 		88.4
(3)
A 		83
B 47.1
(1.9)
A 		7.5
(-3)
A 		56.3
(3)
A 		19.8
(-1.5)
A 		49
C 5.9
(-3)
A 		8.1
(-2.8)
A 		27.4
(-1)
A 		70.1
(3)
M 		64
avr 29.2
(-0.5) 		7.2
(-3) 		43.4
(1.2) 		59.4
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 29.4
(-0.8)
A 		16.7
(-3)
A 		50.9
(3)
P 		26.6
(-1.3)
A 		45.6
(2.1)
A 		28
(-1)
A 		34
B 33.6
(0.4)
A 		29.3
(-0.1)
A 		7.2
(-3)
A 		53.5
(3)
A 		41.2
(1.4)
A 		13.8
(-2.1)
A 		46
C 37
(1.3)
A 		31.7
(0.5)
P 		16.1
(-1.7)
A 		49.1
(3)
A 		6.9
(-3)
A 		29.3
(0.2)
A 		42
avr 33.3
(-0) 		25.9
(-2.3) 		24.7
(-2.7) 		43.1
(3) 		31.2
(-0.7) 		23.7
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.6
(2.8)
A 		1.3
(-3)
A 		12.2
(2.6)
A 		12.9
(3)
A 		12
B 15
(3)
A 		1.9
(-3)
A 		13
(2.1)
A 		4.2
(-1.9)
A 		13
C 1.9
(-3)
A 		2.3
(-2.8)
A 		9.6
(1.7)
A 		11.8
(3)
M 		10
avr 9.8
(1.9) 		1.8
(-3) 		11.6
(3) 		9.6
(1.8) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.4
(-3)
A 		5.9
(-2.6)
A 		11.1
(1.1)
P 		6.7
(-2.1)
A 		13.8
(3)
A 		6.8
(-2)
A 		8
B 11.7
(1)
A 		9.7
(0.2)
A 		1.8
(-3)
A 		14.2
(2)
A 		16.7
(3)
A 		5.1
(-1.7)
A 		15
C 13.7
(3)
A 		9.7
(0.9)
P 		4.1
(-2)
A 		9.9
(1)
A 		2.2
(-3)
A 		9.8
(1)
A 		12
avr 10.3
(2.3) 		8.4
(0.1) 		5.7
(-3) 		10.3
(2.3) 		10.9
(3) 		7.2
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13133
Sequence Type Exemplar sequence
Representative Public ID F55C9.6 NCBI
Target Description F55C9.6 /REP_DB=WormBase Gene ID /WP=CE18738 /TR=Q9XUY8 /GB=CAB04474.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075354(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075354 NCBI Caenorhabditis elegans F55C9.6 (F55C9.6) mRNA, complete cds. 11/11 None
GENEFINDER00000026283 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19293288:19299396:-1 11/11 None
F55C9.6 ENSEMBL cdna:known chromosome:CEL140:V:19296205:19299396:-1 gene:F55C9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19296204-19299396(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55C9.6
Entrez Gene 186294 Entrez gene
SwissProt Q9XUY8 EMBL-EBI
WormBase CE18738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04474 Hypothetical protein F55C9.6 [Caenorhabditis elegans] ref|NP_507755.1| F55C9.6 [Caenorhabditis elegans] 3.0E-68
blast CAB04474 Hypothetical protein F55C9.6 [Caenorhabditis elegans] ref|NP_507755.1| F55C9.6 [Caenorhabditis elegans] 5.0E-64
blast CAB05320 Hypothetical protein ZK896.5 [Caenorhabditis elegans] ref|NP_502453.1| ZK896.5 [Caenorhabditis elegans] 2.0E-55
blast CAB05320 Hypothetical protein ZK896.5 [Caenorhabditis elegans] ref|NP_502453.1| ZK896.5 [Caenorhabditis elegans] 2.0E-54
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 2.0E-40
blast CAB05319 Hypothetical protein ZK896.4 [Caenorhabditis elegans] ref|NP_502454.1| ZK896.4 [Caenorhabditis elegans] 1.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 3.5E-43
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 3.2E-43
Sequence
Target Sequence 
>C. ELEGANS:179500_AT
gagcaggtgtagtttgttaagtatttttgttttgagttcattttcatcatattcattggc
agattacacatgtgctccatcaataacgatcaatccgcctgcagatatttcgaacgcatg
gttttatccaaatacttggaatgatagtttcccagctccaacttatgcggcagggcagaa
ttgttcatggattgtaaatatcccgaaaggaatgtatgcatgggtaaccgtgaatgcttc
aacaaatatacagtcatctctaacgctagtggactcagtgagttattcgaccagaatcga
aaaatcggaaccatttttcctgctgaatccatcattcacagttaaccttcaagcgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAGGTGTAGTTTGTTAAGTATT 145 387 15 Antisense
ACACATGTGCTCCATCAATAACGAT 555 109 80 Antisense
TCAATAACGATCAATCCGCCTGCAG 537 633 94 Antisense
ATCCGCCTGCAGATATTTCGAACGC 183 39 107 Antisense
TTTCGAACGCATGGTTTTATCCAAA 36 671 122 Antisense
GGAATGATAGTTTCCCAGCTCCAAC 637 531 152 Antisense
AGCTCCAACTTATGCGGCAGGGCAG 421 81 168 Antisense
TGCGGCAGGGCAGAATTGTTCATGG 324 583 180 Antisense
TATACAGTCATCTCTAACGCTAGTG 50 661 261 Antisense
CTAACGCTAGTGGACTCAGTGAGTT 220 225 274 Antisense
ATTCACAGTTAACCTTCAAGCGATG 291 11 348 Antisense
Sequence Source Affymetrix Proprietary Database