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[179498_at]

Description C06H5.2 /REP_DB=WormBase Gene ID /WP=CE15604 /TR=O17578 /GB=CAB07162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 65      4grp_total > 01      6grp_highest_sub > Da      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 119.5
(-2.4)
P 		90.1
(-3)
A 		132.1
(-2.2)
A 		399.1
(3)
P 		309
B 142.3
(-1.7)
P 		77.3
(-3)
P 		136
(-1.8)
P 		383.3
(3)
P 		306
C 188.1
(-1.6)
P 		108.5
(-3)
A 		148.4
(-2.3)
P 		450.4
(3)
P 		342
avr 150
(-1.9) 		92
(-3) 		138.8
(-2.1) 		410.9
(3) 		319

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 319
1 2 3 4 5 6 range
A 87.6
(-2.9)
P 		85.5
(-3)
P 		230.3
(3)
P 		139.3
(-0.8)
P 		92
(-2.7)
P 		173.1
(0.6)
P 		145
B 153.1
(-1.3)
P 		112.1
(-3)
P 		117.5
(-2.8)
P 		129.8
(-2.3)
P 		131.5
(-2.2)
P 		259.3
(3)
P 		147
C 81.8
(-2.7)
P 		148.7
(-1.4)
P 		132.5
(-1.8)
P 		248.1
(0.4)
P 		66
(-3)
P 		385.3
(3)
P 		319
avr 107.5
(-2.6) 		115.4
(-2.4) 		160.1
(-0.8) 		172.4
(-0.4) 		96.5
(-3) 		272.6
(3) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 43.5
(0.7)
P 		19.6
(-3)
A 		34.5
(-0.7)
A 		58.4
(3)
P 		39
B 45.4
(-0.5)
P 		19.1
(-3)
P 		31.5
(-1.8)
P 		81.7
(3)
P 		63
C 62.3
(1.2)
P 		31.2
(-3)
A 		51.7
(-0.3)
P 		76
(3)
P 		45
avr 50.4
(0.3) 		23.3
(-3) 		39.2
(-1) 		72
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 16.1
(-3)
P 		30.4
(-0.5)
P 		50.2
(3)
P 		35.3
(0.4)
P 		27.8
(-0.9)
P 		42.2
(1.6)
P 		34
B 53.3
(-0.8)
P 		37.3
(-2.2)
P 		28.5
(-3)
P 		34.4
(-2.5)
P 		53.4
(-0.8)
P 		96.7
(3)
P 		68
C 30.3
(-2.5)
P 		45.4
(-1.7)
P 		33.7
(-2.3)
P 		49.9
(-1.4)
P 		21.4
(-3)
P 		129
(3)
P 		108
avr 33.2
(-3) 		37.7
(-2.5) 		37.5
(-2.5) 		39.9
(-2.3) 		34.2
(-2.9) 		89.3
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12924
Sequence Type Exemplar sequence
Representative Public ID C06H5.2 NCBI
Target Description C06H5.2 /REP_DB=WormBase Gene ID /WP=CE15604 /TR=O17578 /GB=CAB07162.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075109 NCBI Caenorhabditis elegans C06H5.2 (C06H5.2) mRNA, complete cds. 11/11 A 
SNAP00000016166 ENSEMBL cdna:SNAP chromosome:CEL140:V:17902404:17904453:1 11/11 None
C06H5.2 ENSEMBL cdna:known chromosome:CEL140:V:17902404:17904453:1 gene:C06H5.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016177 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17902403-17904453(+) 100.0 100.0
chrV:17897938-17899217(-) 95.39 95.39
Public Domain and Genome References
Gene Title
Ensembl C06H5.2
Entrez Gene 182349 Entrez gene
SwissProt O17578 EMBL-EBI
WormBase CE15604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07162 Hypothetical protein C06H5.2 [Caenorhabditis elegans] ref|NP_507510.1| C06H5.2 [Caenorhabditis elegans] 0.0
blast CAB07161 Hypothetical protein C06H5.1 [Caenorhabditis elegans] ref|NP_741646.1| C06H5.1 [Caenorhabditis elegans] 0.0
blast NP_504642 T05H4.2 [Caenorhabditis elegans] gb|AAB66009.1| Hypothetical protein T05H4.2 [Caenorhabditis elegans] 1.0E-126
blast NP_504642 T05H4.2 [Caenorhabditis elegans] gb|AAB66009.1| Hypothetical protein T05H4.2 [Caenorhabditis elegans] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-5
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.3E-38
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.9E-5
Sequence
Target Sequence 
>C. ELEGANS:179498_AT
gaggaagctttcccaagaggtgatatgatcaagcttcgagatgagattcttctaaaatcc
accaagtttgaatattttacttgtgaaagagtgaaatttgatgcgacactgctcgttaga
gtttttaagccacgctcacctccaagtggttcaactggatcaattgtttataaatctaga
aatgaaacattcgacattgcttttcatcctgatggtttcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAAGCTTTCCCAAGAGGTGATA 186 405 955 Antisense
GCTTTCCCAAGAGGTGATATGATCA 70 305 961 Antisense
GGTGATATGATCAAGCTTCGAGATG 267 501 973 Antisense
TCAAGCTTCGAGATGAGATTCTTCT 94 631 983 Antisense
GAAATTTGATGCGACACTGCTCGTT 595 363 1047 Antisense
GATGCGACACTGCTCGTTAGAGTTT 28 415 1054 Antisense
GCGACACTGCTCGTTAGAGTTTTTA 230 289 1057 Antisense
TAGAGTTTTTAAGCCACGCTCACCT 356 651 1071 Antisense
CTCACCTCCAAGTGGTTCAACTGGA 181 225 1089 Antisense
CATTGCTTTTCATCCTGATGGTTTC 112 217 1149 Antisense
TGCTTTTCATCCTGATGGTTTCAGT 201 579 1152 Antisense
Sequence Source Affymetrix Proprietary Database