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[179497_at]

Description ZK856.4 /REP_DB=WormBase Gene ID /WP=CE06661 /TR=Q23638 /GB=CAA94851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 75      4grp_high_8_8 > 14      6grp_total > 76      4grp_total > 01      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 69.9
(-2.1)
P 		72
(-2.1)
P 		47.8
(-3)
P 		202.1
(3)
P 		154
B 36.9
(-3)
P 		37.6
(-3)
M 		88.8
(-0.5)
P 		162.3
(3)
P 		125
C 50.2
(-2.7)
P 		38.4
(-3)
A 		61.8
(-2.3)
P 		254
(3)
P 		216
avr 52.3
(-2.9) 		49.3
(-3) 		66.1
(-2.4) 		206.1
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 42.8
(-2.7)
P 		40.5
(-3)
A 		40.2
(-3)
P 		76.8
(1.6)
P 		53.6
(-1.3)
P 		87.9
(3)
P 		48
B 37.9
(-3)
P 		41.6
(-2.4)
P 		75.5
(3)
P 		45.7
(-1.8)
P 		55.1
(-0.3)
P 		70.2
(2.2)
P 		38
C 58
(0.4)
P 		75.9
(3)
P 		35.1
(-3)
A 		75.6
(3)
M 		41.2
(-2.1)
A 		65.4
(1.5)
P 		41
avr 46.2
(-3) 		52.7
(-1.6) 		50.3
(-2.1) 		66
(1.2) 		50
(-2.2) 		74.5
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 25.5
(1.6)
P 		15.6
(-1.9)
P 		12.5
(-3)
P 		29.6
(3)
P 		17
B 11.8
(-2.4)
P 		9.3
(-3)
M 		20.6
(-0.3)
P 		34.6
(3)
P 		25
C 16.6
(-1.9)
P 		11
(-3)
A 		21.5
(-1)
P 		42.8
(3)
P 		32
avr 18
(-1.5) 		12
(-3) 		18.2
(-1.4) 		35.7
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.9
(-3)
P 		14.4
(-0.1)
A 		8.8
(-2.6)
P 		19.5
(2.2)
P 		16.2
(0.7)
P 		21.4
(3)
P 		14
B 13.2
(-2.5)
P 		13.8
(-2.3)
P 		18.3
(-0.4)
P 		12.1
(-3)
P 		22.4
(1.4)
P 		26.2
(3)
P 		14
C 21.5
(2.3)
P 		23.2
(3)
P 		8.9
(-3)
A 		15.2
(-0.4)
M 		13.3
(-1.2)
A 		21.9
(2.5)
P 		14
avr 14.2
(-1.8) 		17.1
(-0.3) 		12
(-3) 		15.6
(-1.1) 		17.3
(-0.2) 		23.2
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11853
Sequence Type Exemplar sequence
Representative Public ID ZK856.4 NCBI
Target Description ZK856.4 /REP_DB=WormBase Gene ID /WP=CE06661 /TR=Q23638 /GB=CAA94851.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073216 NCBI Caenorhabditis elegans ZK856.4 (ZK856.4) mRNA, complete cds. 11/11 None
GENEFINDER00000036971 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10185888:10187026:1 11/11 None
ZK856.4 ENSEMBL cdna:known chromosome:CEL140:V:10185864:10187026:1 gene:ZK856.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036946 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10185863-10187026(+) 96.26 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK856.4
Entrez Gene 191440 Entrez gene
SwissProt Q23638 EMBL-EBI
WormBase CE06661 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94851 Hypothetical protein ZK856.4 [Caenorhabditis elegans] ref|NP_505617.1| ZK856.4 [Caenorhabditis elegans] 1.0E-111
blast CAA94851 Hypothetical protein ZK856.4 [Caenorhabditis elegans] ref|NP_505617.1| ZK856.4 [Caenorhabditis elegans] 1.0E-106
blast CAE64750 Hypothetical protein CBG09539 [Caenorhabditis briggsae] 2.0E-30
blast CAE64750 Hypothetical protein CBG09539 [Caenorhabditis briggsae] 3.0E-30
Sequence
Target Sequence 
>C. ELEGANS:179497_AT
tttattatgcatccttgttgcctccgaagcattggattttaatccattacatcaattgtg
ctggttatgtgtacgtattgtgaacttggcaaaacgcacgagcaactcacaagctgtcaa
agaaattgaaaagaatacttgtaatatggtattggacaataatatggtgtgtaatggagc
aattgaggtgtctgcaatgtattttggttggactcctgctgtaaaattatgccataattt
gtatatgtgtgcatctccaagttcagacggaagaagcaagatgaagtctcctgtgaaacg
aggacggcctcccaatgaattgacaaaaaaagttcttgatattttgtacaacgatgagtt
cccagtttccgaaaatcaagatcgttttcgcagacaagtaaatgtcaatgaaagtgcaat
caacttcaacggctttaatgatatcgggaaaatgctccaaggacatgttaccaatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATTATGCATCCTTGTTGCCTCC 531 673 54 Antisense
TCCTTGTTGCCTCCGAAGCATTGGA 7 593 65 Antisense
GTGCTGGTTATGTGTACGTATTGTG 571 479 111 Antisense
ACGCACGAGCAACTCACAAGCTGTC 490 91 147 Antisense
ATGTATTTTGGTTGGACTCCTGCTG 624 47 250 Antisense
GGACTCCTGCTGTAAAATTATGCCA 388 525 263 Antisense
TGTGTGCATCTCCAAGTTCAGACGG 417 555 299 Antisense
AACGAGGACGGCCTCCCAATGAATT 305 143 350 Antisense
ACAACGATGAGTTCCCAGTTTCCGA 233 113 401 Antisense
AAATCAAGATCGTTTTCGCAGACAA 412 117 426 Antisense
GCTCCAAGGACATGTTACCAATTTC 4 297 507 Antisense
Sequence Source Affymetrix Proprietary Database