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[179496_at]

Description F26F2.6 /REP_DB=WormBase Gene ID /WP=CE19818 /TR=Q9XV53 /GB=CAB04192.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 36      6grp_total > 34      4grp_total > 0      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 45
(-0.4)
P 		37.8
(-3)
A 		47.5
(0.5)
P 		54.4
(3)
P 		17
B 29.3
(-3)
A 		30.1
(-2.8)
A 		56.2
(3)
P 		56.3
(3)
M 		27
C 68.4
(3)
P 		62
(1.6)
P 		40.4
(-3)
A 		46.7
(-1.7)
P 		28
avr 47.6
(-0.2) 		43.3
(-3) 		48
(0.1) 		52.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 33.7
(0.3)
P 		58.2
(3)
P 		18.6
(-1.4)
A 		5.8
(-2.8)
A 		4.1
(-3)
A 		29.1
(-0.2)
A 		54
B 57.9
(2.6)
P 		25.3
(-2.3)
A 		60.7
(3)
P 		32
(-1.3)
A 		58.1
(2.6)
P 		20.6
(-3)
A 		40
C 49.5
(3)
P 		35.3
(-2)
P 		41.6
(0.2)
A 		45.8
(1.7)
P 		32.4
(-3)
A 		38.2
(-1)
A 		17
avr 47
(3) 		39.6
(0.7) 		40.3
(0.9) 		27.9
(-3) 		31.5
(-1.9) 		29.3
(-2.6) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 16.4
(3)
P 		8.2
(-2.9)
A 		12.4
(0.1)
P 		8
(-3)
P 		8
B 9.3
(-1)
A 		7.4
(-3)
A 		13
(3)
P 		12
(1.9)
M 		6
C 22.7
(3)
P 		17.8
(1)
P 		14.1
(-0.5)
A 		7.9
(-3)
P 		15
avr 16.1
(3) 		11.1
(-1.4) 		13.2
(0.4) 		9.3
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.2
(-1.5)
P 		20.7
(3)
P 		4.1
(-2.1)
A 		1.5
(-2.9)
A 		1.2
(-3)
A 		7.1
(-1.2)
A 		20
B 20.1
(1.7)
P 		8.4
(-2.7)
A 		14.7
(-0.4)
P 		8.5
(-2.7)
A 		23.6
(3)
P 		7.7
(-3)
A 		16
C 18.3
(3)
P 		10.8
(-1.9)
P 		10.6
(-2.1)
A 		9.2
(-3)
P 		10.5
(-2.1)
A 		12.8
(-0.6)
A 		9
avr 14.9
(3) 		13.3
(1.9) 		9.8
(-0.6) 		6.4
(-3) 		11.8
(0.8) 		9.2
(-1) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13262
Sequence Type Exemplar sequence
Representative Public ID F26F2.6 NCBI
Target Description F26F2.6 /REP_DB=WormBase Gene ID /WP=CE19818 /TR=Q9XV53 /GB=CAB04192.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075570(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075570 NCBI Caenorhabditis elegans F26F2.6 (F26F2.6) mRNA, complete cds. 9/11 None
GENEFINDER00000015807 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20572676:20575716:1 11/11 None
F26F2.6 ENSEMBL cdna:known chromosome:CEL140:V:20572676:20575687:1 gene:F26F2.6 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015792 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20572675-20575716(+) 99.22 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F2.6
Entrez Gene 184987 Entrez gene
SwissProt Q9XV53 EMBL-EBI
WormBase CE31796 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04192 Hypothetical protein F26F2.6 [Caenorhabditis elegans] ref|NP_507971.2| F26F2.6 [Caenorhabditis elegans] 0.0
blast CAB54340 Hypothetical protein Y26D4A.2 [Caenorhabditis elegans] ref|NP_493285.2| Y26D4A.2 [Caenorhabditis elegans] 1.0E-58
blast CAE63463 Hypothetical protein CBG07930 [Caenorhabditis briggsae] 2.0E-56
Sequence
Target Sequence 
>C. ELEGANS:179496_AT
aaatagcggactcgcctgatcaacctactgcaaccacaacagagatgagcgttccaaagc
aaagctgtaaggacgctgatgcaagatttattccgggagttcaaagatgttataagatgg
tattcacaaaagataaaactgatccgactataaatgcgttcacatctcacgaggaggcag
ccgggaactgtactagtattggaggaaacggtcttatgacagttgctaccaatgactcga
tgaagcttttcaaaacgggaattctcgaaaagtggcacgacttttggtgggttggactca
tcaaaaaagatagcaactggacgtggatgcttcctgagcttgttactgataacaccccga
ttccctgggctcgagatcaaaaatttaatgaaggagacgactgcggatatgtgcaacttg
tacccgataggatgcaaataaaagatgaggtgcagccctttaggttggtttcagataaaa
gaaggactaatgctgtaaagtgcctcggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAGCGGACTCGCCTGATCAACC 403 117 1334 Antisense
ATGCGTTCACATCTCACGAGGAGGC 130 41 1487 Antisense
GGAGGCAGCCGGGAACTGTACTAGT 651 515 1506 Antisense
GACAGTTGCTACCAATGACTCGATG 378 369 1551 Antisense
GACTTTTGGTGGGTTGGACTCATCA 669 371 1612 Antisense
GCAACTGGACGTGGATGCTTCCTGA 704 319 1646 Antisense
GCTTCCTGAGCTTGTTACTGATAAC 686 305 1662 Antisense
GATTCCCTGGGCTCGAGATCAAAAA 405 431 1692 Antisense
ATGTGCAACTTGTACCCGATAGGAT 630 47 1742 Antisense
GGTGCAGCCCTTTAGGTTGGTTTCA 368 501 1782 Antisense
CTAATGCTGTAAAGTGCCTCGGCCG 414 225 1820 Antisense
Sequence Source Affymetrix Proprietary Database