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[179495_at]

Description F16H6.6 /REP_DB=WormBase Gene ID /WP=CE18602 /TR=Q9XV93 /GB=CAB04126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 18.5
(0.1)
A 		17
(-0.2)
A 		3.7
(-3)
A 		32.7
(3)
P 		29
B 1.4
(-3)
A 		40.9
(1.5)
A 		1.8
(-3)
A 		54.6
(3)
P 		53
C 0.9
(-3)
A 		23.3
(-0.7)
A 		10.5
(-2)
A 		60.2
(3)
P 		59
avr 6.9
(-2.8) 		27.1
(-0) 		5.3
(-3) 		49.2
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 20.5
(0.9)
A 		30.7
(3)
A 		8.8
(-1.5)
A 		1.3
(-3)
A 		3
(-2.7)
A 		4.9
(-2.3)
A 		29
B 2.1
(-3)
A 		23.6
(2.9)
A 		23.9
(3)
A 		13.4
(0.1)
A 		19
(1.7)
A 		16.2
(0.9)
A 		22
C 7.2
(-1.3)
A 		15.6
(1.3)
A 		21
(3)
A 		17
(1.8)
A 		8.2
(-1)
A 		1.8
(-3)
A 		19
avr 9.9
(-2.1) 		23.3
(3) 		17.9
(0.9) 		10.6
(-1.9) 		10.1
(-2) 		7.6
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.7
(3)
A 		3.7
(-0.2)
A 		1
(-3)
A 		4.8
(1)
P 		6
B 0.4
(-3)
A 		10.1
(2.2)
A 		0.4
(-3)
A 		11.6
(3)
P 		11
C 0.3
(-3)
A 		6.7
(0.9)
A 		3.7
(-0.9)
A 		10.2
(3)
P 		10
avr 2.5
(-2.3) 		6.8
(1.3) 		1.7
(-3) 		8.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.8
(-1)
A 		10.9
(3)
A 		1.9
(-2.1)
A 		0.3
(-3)
A 		0.9
(-2.7)
A 		1.2
(-2.5)
A 		11
B 0.7
(-3)
A 		7.8
(3)
A 		5.8
(1.3)
A 		3.5
(-0.6)
A 		7.7
(2.9)
A 		6
(1.5)
A 		7
C 2.7
(-0.4)
A 		4.7
(2.1)
A 		5.4
(3)
A 		3.4
(0.5)
A 		2.7
(-0.4)
A 		0.6
(-3)
A 		5
avr 2.4
(-3) 		7.8
(3) 		4.4
(-0.8) 		2.4
(-3) 		3.8
(-1.4) 		2.6
(-2.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13528
Sequence Type Exemplar sequence
Representative Public ID F16H6.6 NCBI
Target Description F16H6.6 /REP_DB=WormBase Gene ID /WP=CE18602 /TR=Q9XV93 /GB=CAB04126.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075160(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075160 NCBI Caenorhabditis elegans F16H6.6 (F16H6.6) mRNA, complete cds. 11/11 None
F16H6.6 ENSEMBL cdna:known chromosome:CEL140:V:18208220:18208570:1 gene:F16H6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001297 7/11 Cross Hyb Matching Probes None
GENEFINDER00000001309 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18208219-18208570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16H6.6
Entrez Gene 184593 Entrez gene
SwissProt Q9XV93 EMBL-EBI
WormBase CE18602 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04126 Hypothetical protein F16H6.6 [Caenorhabditis elegans] ref|NP_507561.1| F16H6.6 [Caenorhabditis elegans] 9.0E-54
Sequence
Target Sequence 
>C. ELEGANS:179495_AT
tgaaatctgaagccaatcttcgcggcatgattgatattgagttttactaccatacgtgcg
aagcaaaaaagtacttcaggaatgaagtcatcaattatcttgtcaacttaaaatcaaacg
ttactatcgaaatgacaagatattggactgaaggtgccgatgtggtgaatcatcttttct
tttgcaatattcatggaattggaattccaaaccttcatggagttttgttccaagtgaaaa
gttaccgctattattctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCTGAAGCCAATCTTCGCGG 89 573 14 Antisense
TCTTCGCGGCATGATTGATATTGAG 200 617 30 Antisense
GTTTTACTACCATACGTGCGAAGCA 456 447 54 Antisense
GAAGTCATCAATTATCTTGTCAACT 446 335 97 Antisense
CAAACGTTACTATCGAAATGACAAG 27 193 128 Antisense
GGACTGAAGGTGCCGATGTGGTGAA 46 523 158 Antisense
GTGGTGAATCATCTTTTCTTTTGCA 126 489 175 Antisense
ATCATCTTTTCTTTTGCAATATTCA 139 31 182 Antisense
GGAATTCCAAACCTTCATGGAGTTT 664 533 214 Antisense
GTTCCAAGTGAAAAGTTACCGCTAT 49 439 240 Antisense
GAAAAGTTACCGCTATTATTCTGGT 362 351 249 Antisense
Sequence Source Affymetrix Proprietary Database