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[179494_s_at]

Description B0491.5 /REP_DB=WormBase Gene ID /WP=CE02107 /TR=Q17512 /GB=CAA90087.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 41      4grp_highest_8_8 > 09      4grp_high_8_8 > 53      6grp_highest_nonorm > 26      6grp_total > 42      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3219
1 2 3 4 range
A 5807.7
(0.2)
P 		7000
(2.7)
P 		7144.9
(3)
P 		4260.3
(-3)
P 		2885
B 5433
(-1.7)
P 		6568.1
(1.1)
P 		7336.9
(3)
P 		4931.7
(-3)
P 		2405
C 5230.5
(0.2)
P 		6188.4
(3)
P 		5954.5
(2.3)
P 		4117.9
(-3)
P 		2071
avr 5490.4
(-0.3) 		6585.5
(2.4) 		6812.1
(3) 		4436.6
(-3) 		2376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3986
1 2 3 4 5 6 range
A 7899.5
(3)
P 		6803.7
(0.6)
P 		7493
(2.1)
P 		6301.4
(-0.5)
P 		5853
(-1.5)
P 		5179.6
(-3)
P 		2720
B 5711.3
(-1)
P 		6055.9
(-0.5)
P 		8370.5
(3)
P 		7258.7
(1.3)
P 		5735.4
(-1)
P 		4393.8
(-3)
P 		3977
C 6099.5
(-0.3)
P 		6217.4
(-0.2)
P 		8244
(3)
P 		6931.2
(1)
P 		5781
(-0.8)
P 		4384.9
(-3)
P 		3859
avr 6570.1
(0.4) 		6359
(0) 		8035.8
(3) 		6830.4
(0.9) 		5789.8
(-1) 		4652.8
(-3) 		3383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1491
1 2 3 4 range
A 2114.6
(3)
P 		1519.5
(0.6)
P 		1867.8
(2)
P 		623.6
(-3)
P 		1491
B 1732.6
(3)
P 		1622.2
(2)
P 		1700.1
(2.7)
P 		1051
(-3)
P 		682
C 1731.4
(1.5)
P 		1779.2
(1.7)
P 		2075.3
(3)
P 		694.3
(-3)
P 		1381
avr 1859.5
(2.9) 		1640.3
(1.7) 		1881.1
(3) 		789.6
(-3) 		1092

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1159
1 2 3 4 5 6 range
A 1456.2
(-2)
P 		2419.7
(3)
P 		1631.8
(-1.1)
P 		1598.2
(-1.3)
P 		1766.2
(-0.4)
P 		1261.1
(-3)
P 		1159
B 1987.2
(0)
P 		2015.8
(0.3)
P 		2032.6
(0.4)
P 		1922.6
(-0.5)
P 		2330.2
(3)
P 		1638.4
(-3)
P 		692
C 2260.8
(3)
P 		1897.1
(0.5)
P 		2098.2
(1.9)
P 		1393.9
(-3)
P 		1870.6
(0.3)
P 		1467.9
(-2.5)
P 		867
avr 1901.4
(1.1) 		2110.9
(3) 		1920.9
(1.3) 		1638.2
(-1.3) 		1989
(1.9) 		1455.8
(-3) 		655
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179494_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3708
Sequence Type Exemplar sequence
Representative Public ID B0491.5 NCBI
Target Description B0491.5 /REP_DB=WormBase Gene ID /WP=CE02107 /TR=Q17512 /GB=CAA90087.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064023(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064023 NCBI Caenorhabditis elegans B0491.5 (B0491.5) mRNA, complete cds. 11/11 None
SNAP00000040220 ENSEMBL cdna:SNAP chromosome:CEL140:II:11343774:11345521:-1 11/11 None
GENEFINDER00000040230 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11343774:11345521:-1 11/11 None
B0491.5.1 ENSEMBL cdna:known chromosome:CEL140:II:11343628:11345526:-1 gene:B0491.5 11/11 None
B0491.5.2 ENSEMBL cdna:known chromosome:CEL140:II:11343629:11345532:-1 gene:B0491.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11343770-11345518(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0491.5
Entrez Gene 174734 Entrez gene
SwissProt Q17512 EMBL-EBI
WormBase CE02107 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90087 Hypothetical protein B0491.5 [Caenorhabditis elegans] ref|NP_496424.1| B0491.5 [Caenorhabditis elegans] 0.0
blast CAE59526 Hypothetical protein CBG02921 [Caenorhabditis briggsae] 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:179494_S_AT
agagcatccaggactatccgttagtccaaccttgagcgataatatgctaactccaaagga
cgagttaggcagaaacgccgtgttgccaaactcttggtatcctgccggaccccgtttctt
cgacagtccactcaatgagggatctttctggaaaggacttgccgccgccaagtatgctgg
aattttgttggctccatacactatgctggaaatccgtgcactcaatacagtctcggtatc
cgaattctcgccaagaacctatatgaagagatacctccaactcgctccattcccattggc
cgttgcattcgcctggggcttcagtctttcagcagcctcatcgatccgtcataaggatga
tgtccataatcattggttcgctagtgttgctgttggatcaaccgtggctaccatgaagag
caacgttgcccttggaaccactgccgccatcttcaccgccatcctcggagcattctggca
gtatcaacgacactcggagactggactccaaggaatgactgctcatccacaatctgccgg
aatctgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGCATCCAGGACTATCCGTTAGT 33 71 384 Antisense
TCCGTTAGTCCAACCTTGAGCGATA 74 589 400 Antisense
GCAGAAACGCCGTGTTGCCAAACTC 380 309 452 Antisense
GTTTCTTCGACAGTCCACTCAATGA 655 449 497 Antisense
TGCCGCCGCCAAGTATGCTGGAATT 347 585 543 Antisense
AATCCGTGCACTCAATACAGTCTCG 234 167 594 Antisense
GTCTCGGTATCCGAATTCTCGCCAA 123 467 613 Antisense
ATGAAGAGATACCTCCAACTCGCTC 177 45 646 Antisense
CAGCCTCATCGATCCGTCATAAGGA 636 201 716 Antisense
GGTTCGCTAGTGTTGCTGTTGGATC 397 507 758 Antisense
TCATCCACAATCTGCCGGAATCTGG 25 623 906 Antisense
Sequence Source Affymetrix Proprietary Database