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[179493_at]

Description K06A4.2 /REP_DB=WormBase Gene ID /WP=CE06106 /TR=Q21256 /GB=CAA94785.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 40      6grp_high1_10_10 > 06      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 24      4grp_total > 31      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 621
1 2 3 4 range
A 784.5
(3)
P 		233.5
(-2.3)
P 		165.1
(-3)
P 		489.9
(0.1)
P 		619
B 744
(3)
P 		267.4
(-2.1)
P 		179.1
(-3)
P 		545
(0.9)
P 		565
C 693.9
(3)
P 		190.6
(-2.7)
P 		163.2
(-3)
P 		568.6
(1.6)
P 		531
avr 740.8
(3) 		230.5
(-2.4) 		169.1
(-3) 		534.5
(0.8) 		572

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 543.3
(3)
P 		345.5
(-0.1)
P 		452.9
(1.6)
P 		237.6
(-1.8)
P 		268.2
(-1.4)
P 		164.7
(-3)
P 		379
B 626.7
(3)
P 		364.6
(-1)
P 		317.7
(-1.7)
P 		292.9
(-2.1)
P 		273.3
(-2.4)
P 		231.1
(-3)
P 		396
C 350.8
(1.6)
P 		400
(3)
P 		316.9
(0.6)
P 		224.9
(-2)
P 		191.3
(-3)
P 		203.3
(-2.7)
P 		209
avr 506.9
(3) 		370
(0.3) 		362.5
(0.2) 		251.8
(-2) 		244.3
(-2.1) 		199.7
(-3) 		307
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 285.6
(3)
P 		50.7
(-2.8)
P 		43.2
(-3)
P 		71.7
(-2.3)
P 		242
B 237.3
(3)
P 		66
(-2.2)
P 		41.5
(-3)
P 		116.1
(-0.7)
P 		196
C 229.7
(3)
P 		54.8
(-3)
P 		56.9
(-2.9)
P 		95.9
(-1.6)
P 		175
avr 250.9
(3) 		57.2
(-2.7) 		47.2
(-3) 		94.6
(-1.6) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 100.2
(1.4)
P 		122.9
(3)
P 		98.6
(1.2)
P 		60.3
(-1.5)
P 		80.9
(-0)
P 		40.1
(-3)
P 		83
B 218.1
(3)
P 		121.4
(-1.1)
P 		77.1
(-3)
P 		77.6
(-3)
P 		111.1
(-1.6)
P 		86.2
(-2.6)
P 		141
C 130
(3)
P 		122.1
(2.4)
P 		80.7
(-0.5)
P 		45.2
(-3)
P 		61.9
(-1.8)
P 		68.1
(-1.4)
P 		85
avr 149.4
(3) 		122.1
(1.1) 		85.5
(-1.3) 		61
(-3) 		84.6
(-1.4) 		64.8
(-2.7) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11572
Sequence Type Exemplar sequence
Representative Public ID K06A4.2 NCBI
Target Description K06A4.2 /REP_DB=WormBase Gene ID /WP=CE06106 /TR=Q21256 /GB=CAA94785.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073046(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073046 NCBI Caenorhabditis elegans K06A4.2 (K06A4.2) mRNA, complete cds. 11/11 None
SNAP00000041744 ENSEMBL cdna:SNAP chromosome:CEL140:V:9490697:9491457:1 11/11 None
GENEFINDER00000041749 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9484839:9491457:1 11/11 None
K06A4.2 ENSEMBL cdna:known chromosome:CEL140:V:9490697:9491600:1 gene:K06A4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9490696-9491457(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06A4.2
Entrez Gene 187046 Entrez gene
SwissProt Q21256 EMBL-EBI
WormBase CE06106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE72176 Hypothetical protein CBG19283 [Caenorhabditis briggsae] 1.0E-151
blast CAA94785 Hypothetical protein K06A4.2 [Caenorhabditis elegans] ref|NP_505447.1| K06A4.2 [Caenorhabditis elegans] 1.0E-126
blast CAA94785 Hypothetical protein K06A4.2 [Caenorhabditis elegans] ref|NP_505447.1| K06A4.2 [Caenorhabditis elegans] 1.0E-125
blast CAE72176 Hypothetical protein CBG19283 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505447.1 4 49-71,91-113,120-142,162-181
K06A4.2 4 49-71,91-113,120-142,162-181
SNAP00000041744 4 49-71,91-113,120-142,162-181
GENEFINDER00000041749 5 36-58,368-390,410-432,439-461,481-500
Sequence
Target Sequence 
>C. ELEGANS:179493_AT
gataacactcagacttggccgtttttcaatccatcaactcgttttcgtctcctcaaaata
atttttgttttaatgtgtcttgttgatataatgcattgggcttatctacttcgagacgat
actaatgagaatcccaattcttggagattttacaaaaagttcaaaagttttgatctctat
taccttgtggctcgaatgttcgctgatattttcacttgtgttctcggtttgggtgctgca
atgtggacacggaaacctttgttaacacttccttgcaccacaattcaattgctctttttg
ctcattcgagccgctgtttggtcagttagaagttacaacagacttcttgaaaagcttcat
gctaccaatgaagataaggtcttcgtaatctgtgaatttgcactccctgctatttgggct
cttttgtccttcttaattgttcacacaactcgtcgtctccgatgttacgaacaattacac
ggatatgctcgtcctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAACACTCAGACTTGGCCGTTTT 434 421 115 Antisense
TTGGCCGTTTTTCAATCCATCAACT 138 703 129 Antisense
AATGCATTGGGCTTATCTACTTCGA 221 163 204 Antisense
TGATCTCTATTACCTTGTGGCTCGA 244 563 285 Antisense
TTTCACTTGTGTTCTCGGTTTGGGT 391 669 324 Antisense
ACTTCCTTGCACCACAATTCAATTG 440 103 381 Antisense
CTCATTCGAGCCGCTGTTTGGTCAG 489 229 415 Antisense
AATCTGTGAATTTGCACTCCCTGCT 519 169 501 Antisense
TCCCTGCTATTTGGGCTCTTTTGTC 179 597 518 Antisense
AACTCGTCGTCTCCGATGTTACGAA 659 139 561 Antisense
AATTACACGGATATGCTCGTCCTCC 482 175 587 Antisense
Sequence Source Affymetrix Proprietary Database