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[179492_at]

Description F47B8.4 /REP_DB=WormBase Gene ID /WP=CE10638 /TR=Q20518 /GB=CAB01193.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 09      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 1.7
(-3)
A 		4.3
(-2.5)
A 		4.5
(-2.4)
A 		31.4
(3)
A 		30
B 3
(-3)
A 		22.5
(-1.5)
A 		5.1
(-2.8)
A 		81.3
(3)
A 		78
C 4.6
(-3)
A 		28.6
(-1.7)
A 		44
(-0.8)
A 		112.7
(3)
P 		108
avr 3.1
(-3) 		18.5
(-1.7) 		17.9
(-1.8) 		75.1
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 30.4
(-3)
A 		38.5
(-2.7)
A 		69.8
(-1.5)
P 		192.7
(3)
P 		90.8
(-0.8)
P 		76.6
(-1.3)
A 		162
B 4.1
(-3)
A 		31.6
(-1.9)
A 		113.2
(1.5)
P 		113.8
(1.6)
P 		148.4
(3)
P 		53.1
(-1)
P 		144
C 38.7
(-2.1)
A 		15.5
(-3)
A 		89
(-0.2)
P 		171.6
(3)
P 		127.6
(1.3)
P 		161.4
(2.6)
P 		156
avr 24.4
(-3) 		28.5
(-2.8) 		90.7
(-0.1) 		159.4
(3) 		122.3
(1.4) 		97
(0.2) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 0.6
(-3)
A 		0.9
(-2.6)
A 		1.2
(-2.1)
A 		4.6
(3)
A 		4
B 0.9
(-3)
A 		5.6
(-1.3)
A 		1.2
(-2.9)
A 		17.3
(3)
A 		16
C 1.5
(-3)
A 		8.2
(-0.7)
A 		15.3
(1.7)
A 		19
(3)
P 		18
avr 1
(-3) 		4.9
(-1.1) 		5.9
(-0.7) 		13.6
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 5.6
(-3)
A 		13.7
(-1.9)
A 		15.2
(-1.7)
P 		48.9
(3)
P 		27.4
(0)
P 		18.7
(-1.2)
A 		43
B 1.4
(-3)
A 		10.5
(-2.1)
A 		27.5
(-0.3)
P 		30.1
(-0.1)
P 		60.3
(3)
P 		19.8
(-1.1)
P 		59
C 14.3
(-1.8)
A 		4.7
(-3)
A 		22.7
(-0.8)
P 		34.5
(0.6)
P 		41.3
(1.5)
P 		54
(3)
P 		49
avr 7.1
(-3) 		9.6
(-2.6) 		21.8
(-0.5) 		37.8
(2.1) 		43
(3) 		30.8
(1) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13499
Sequence Type Exemplar sequence
Representative Public ID F47B8.4 NCBI
Target Description F47B8.4 /REP_DB=WormBase Gene ID /WP=CE10638 /TR=Q20518 /GB=CAB01193.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074149(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074149 NCBI Caenorhabditis elegans F47B8.4 (F47B8.4) mRNA, complete cds. 11/11 None
SNAP00000011438 ENSEMBL cdna:SNAP chromosome:CEL140:V:14326195:14326856:-1 10/11 None
GENEFINDER00000011450 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14326195:14327176:-1 11/11 None
F47B8.4 ENSEMBL cdna:known chromosome:CEL140:V:14326195:14327030:-1 gene:F47B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14326194-14327030(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F47B8.4
Entrez Gene 179930 Entrez gene
SwissProt Q20518 EMBL-EBI
WormBase CE10638 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01193 Hypothetical protein F47B8.4 [Caenorhabditis elegans] ref|NP_506550.1| F47B8.4 [Caenorhabditis elegans] 1.0E-116
blast CAB01193 Hypothetical protein F47B8.4 [Caenorhabditis elegans] ref|NP_506550.1| F47B8.4 [Caenorhabditis elegans] 2.0E-92
blast CAB01194 Hypothetical protein F47B8.3 [Caenorhabditis elegans] ref|NP_506549.1| F47B8.3 [Caenorhabditis elegans] 8.0E-69
blast CAB01194 Hypothetical protein F47B8.3 [Caenorhabditis elegans] ref|NP_506549.1| F47B8.3 [Caenorhabditis elegans] 3.0E-62
blast CAE60924 Hypothetical protein CBG04646 [Caenorhabditis briggsae] 1.0E-61
blast CAE60924 Hypothetical protein CBG04646 [Caenorhabditis briggsae] 2.0E-54
Sequence
Target Sequence 
>C. ELEGANS:179492_AT
aagaacctccagatgttgaagacaattattgatagctttgagtatacattgaataaaata
gcattcgaaataagcaaagcaaaaggccaaaattttttcatcgagaaggtagagaaacta
atcaacaatctcaatccattcgacgtgccaatttacgaaaatattcaaggcgtcgtatta
gaactgaatactcaagtttcatcaatgggaaatattcctgaaaaactagaaattaaaacg
caaagggagacttttcaactcgaagaagaaaatgagatcagaatggataattgtagaatg
atgagtggtcaagctaaaatttacaaaatcttccgaaaatcggttgttcttttcgtgaat
tatcttgaggatgagcaaactttatctacaatacaatcactcaatgataatcaaattgaa
tacactatatttgatgtttccacagattctgaaattcgatttatttcaaaagcattatca
gattgtgaaaccttccctcagctgttcgttgatggagcttttgagccattgccaattctg
aaaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAACCTCCAGATGTTGAAGACAA 186 153 175 Antisense
GCAAAAGGCCAAAATTTTTTCATCG 529 317 253 Antisense
GAAACTAATCAACAATCTCAATCCA 232 357 288 Antisense
AACAATCTCAATCCATTCGACGTGC 278 135 298 Antisense
ATCCATTCGACGTGCCAATTTACGA 616 37 308 Antisense
ATTCAAGGCGTCGTATTAGAACTGA 571 9 337 Antisense
AGAACTGAATACTCAAGTTTCATCA 250 73 354 Antisense
GGGAGACTTTTCAACTCGAAGAAGA 424 493 419 Antisense
ATCGGTTGTTCTTTTCGTGAATTAT 7 35 513 Antisense
GGAGCTTTTGAGCCATTGCCAATTC 15 521 688 Antisense
GAGCCATTGCCAATTCTGAAAAATC 482 385 697 Antisense
Sequence Source Affymetrix Proprietary Database