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[179491_at]

Description ZK669.2 /REP_DB=WormBase Gene ID /WP=CE16741 /TR=Q23569 /GB=CAA85467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 32      6grp_highest_nonorm > 80      6grp_total > 21      4grp_total > 49      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 276
1 2 3 4 range
A 17.6
(-3)
A 		286.3
(3)
P 		257.1
(2.3)
P 		69.2
(-1.8)
A 		269
B 10.6
(-3)
A 		206.9
(1.3)
P 		286.7
(3)
P 		35.2
(-2.5)
A 		276
C 33.3
(-3)
A 		251.1
(2.6)
P 		266.1
(3)
P 		75.8
(-1.9)
A 		233
avr 20.5
(-3) 		248.1
(2.5) 		270
(3) 		60.1
(-2) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 178.8
(0.3)
P 		235
(1.6)
P 		291.7
(3)
P 		196.3
(0.7)
P 		148.1
(-0.4)
P 		40.6
(-3)
P 		251
B 137.6
(-1.4)
P 		236.6
(2.4)
P 		253.1
(3)
P 		153.9
(-0.8)
P 		163
(-0.4)
P 		96.3
(-3)
P 		157
C 184.9
(0.6)
P 		262.4
(3)
P 		194.8
(0.9)
P 		188.2
(0.7)
P 		143.2
(-0.7)
P 		68.4
(-3)
P 		194
avr 167.1
(0.3) 		244.7
(2.9) 		246.5
(3) 		179.5
(0.7) 		151.4
(-0.2) 		68.4
(-3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 6.4
(-3)
A 		62.1
(2.5)
P 		67.2
(3)
P 		10.1
(-2.6)
A 		61
B 3.4
(-3)
A 		51.1
(1.5)
P 		66.4
(3)
P 		7.5
(-2.6)
A 		63
C 11
(-3)
A 		72.2
(1.5)
P 		92.8
(3)
P 		12.8
(-2.9)
A 		82
avr 6.9
(-3) 		61.8
(1.8) 		75.5
(3) 		10.1
(-2.7) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 33
(-1.1)
P 		83.6
(3)
P 		63.5
(1.4)
P 		49.8
(0.2)
P 		44.7
(-0.2)
P 		9.9
(-3)
P 		74
B 47.9
(-1.3)
P 		78.8
(3)
P 		61.5
(0.6)
P 		40.8
(-2.3)
P 		66.2
(1.2)
P 		35.9
(-3)
P 		43
C 68.5
(1.8)
P 		80.1
(3)
P 		49.6
(-0.2)
P 		37.8
(-1.4)
P 		46.3
(-0.5)
P 		22.9
(-3)
P 		57
avr 49.8
(-0.2) 		80.8
(3) 		58.2
(0.7) 		42.8
(-0.9) 		52.4
(0.1) 		22.9
(-3) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4126
Sequence Type Exemplar sequence
Representative Public ID ZK669.2 NCBI
Target Description ZK669.2 /REP_DB=WormBase Gene ID /WP=CE16741 /TR=Q23569 /GB=CAA85467.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063267(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063267 NCBI Caenorhabditis elegans ZK669.2 (ZK669.2) mRNA, complete cds. 11/11 None
SNAP00000000891 ENSEMBL cdna:SNAP chromosome:CEL140:II:7936638:7938087:-1 11/11 None
ZK669.2 ENSEMBL cdna:known chromosome:CEL140:II:7936638:7938505:-1 gene:ZK669.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000896 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7936634-7938502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK669.2
Entrez Gene 191387 Entrez gene
SwissProt Q23569 EMBL-EBI
WormBase CE16741 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA85467 Hypothetical protein ZK669.2 [Caenorhabditis elegans] ref|NP_495668.1| ZK669.2 [Caenorhabditis elegans] 1.0E-154
blast CAA85467 Hypothetical protein ZK669.2 [Caenorhabditis elegans] ref|NP_495668.1| ZK669.2 [Caenorhabditis elegans] 1.0E-135
blast CAE59818 Hypothetical protein CBG03285 [Caenorhabditis briggsae] 8.0E-57
blast CAE59818 Hypothetical protein CBG03285 [Caenorhabditis briggsae] 2.0E-56
blast CAE59816 Hypothetical protein CBG03282 [Caenorhabditis briggsae] 2.0E-31
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.5E-61
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 1.5E-61
Sequence
Target Sequence 
>C. ELEGANS:179491_AT
gatggctgatcaagcttctcgagcaaaaactccaccaatcaatattgagttttttggtga
aagtttatgtccagatactaccagatacttccgaaatcatatcatgccggtttggacatc
tttgcaggcgtcttccacaattaatatcacttatcatccatttggattagcatcttgcag
acggagtgcagaaacaggaatcaggtgcaattgtcaacatggacctgcagaatgtcagtt
gaatatgttgcaagcttgtgtcataagcacacttcaagtaccacagctatatcttccaat
tgttaactgcatgcagggaaaaaataaattttcttctgctgtcgacgattgtattgtgaa
cttccggccaagaccagatttggatgaaaacttcatggctcgatgtgcacaaagtcaact
tggagccaaattaatgatgcagcatggttatagacagaaagaagttgcttcggaacttga
ttgggtcccatggattttgatcaatggaagaagatcccaagcagcagaaaatcaattgaa
aaccatagtgtgccaattctccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCTGATCAAGCTTCTCGAGCA 295 407 195 Antisense
GCTTCTCGAGCAAAAACTCCACCAA 76 307 208 Antisense
GTCCAGATACTACCAGATACTTCCG 480 477 263 Antisense
ATCATGCCGGTTTGGACATCTTTGC 200 29 295 Antisense
GCAGGCGTCTTCCACAATTAATATC 477 311 318 Antisense
GCACACTTCAAGTACCACAGCTATA 247 317 461 Antisense
AAATTTTCTTCTGCTGTCGACGATT 360 115 520 Antisense
GTATTGTGAACTTCCGGCCAAGACC 49 453 545 Antisense
GAAAACTTCATGGCTCGATGTGCAC 3 355 580 Antisense
GCTTCGGAACTTGATTGGGTCCCAT 12 303 661 Antisense
AAACCATAGTGTGCCAATTCTCCGA 576 125 734 Antisense
Sequence Source Affymetrix Proprietary Database