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[179490_at]

Description T26H5.3 /REP_DB=WormBase Gene ID /WP=CE18291 /TR=O62384 /GB=CAB04854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 24      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 7.2
(-3)
A 		40.7
(2.2)
A 		30.3
(0.6)
A 		46.1
(3)
A 		39
B 23.7
(-1)
A 		11.8
(-3)
A 		47.4
(3)
P 		31.2
(0.3)
A 		36
C 22.4
(-2.7)
A 		39.2
(2)
A 		21.4
(-3)
A 		42.8
(3)
P 		21
avr 17.8
(-3) 		30.6
(0.5) 		33
(1.1) 		40
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 77.1
(3)
P 		35
(-2.9)
P 		54.8
(-0.1)
P 		56.8
(0.2)
P 		64.9
(1.3)
P 		34.1
(-3)
A 		43
B 54.1
(1.7)
P 		38.3
(-1.6)
P 		60.3
(3)
P 		49.1
(0.6)
A 		31.8
(-3)
P 		32.1
(-2.9)
A 		29
C 13.1
(-2.6)
A 		56.2
(3)
P 		30.5
(-0.4)
A 		37.4
(0.5)
A 		30.4
(-0.4)
P 		10.2
(-3)
A 		46
avr 48.1
(2.9) 		43.2
(1.6) 		48.5
(3) 		47.8
(2.8) 		42.4
(1.4) 		25.5
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.6
(-3)
A 		8.8
(3)
A 		7.9
(2.1)
A 		6.8
(1.1)
A 		6
B 7.5
(0.4)
A 		2.9
(-3)
A 		11
(3)
P 		6.6
(-0.3)
A 		8
C 7.4
(-2.7)
A 		11.3
(3)
A 		7.4
(-2.7)
A 		7.2
(-3)
P 		4
avr 5.8
(-3) 		7.7
(0.8) 		8.8
(3) 		6.9
(-0.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 14.2
(0.1)
P 		12.4
(-0.8)
P 		11.9
(-1.1)
P 		14.4
(0.2)
P 		19.6
(3)
P 		8.3
(-3)
A 		11
B 18.8
(3)
P 		12.8
(-2.3)
P 		14.6
(-0.7)
P 		13
(-2.1)
A 		12.9
(-2.2)
P 		12
(-3)
A 		7
C 4.8
(-2.4)
A 		17.1
(3)
P 		7.8
(-1.1)
A 		7.5
(-1.2)
A 		9.8
(-0.2)
P 		3.4
(-3)
A 		14
avr 12.6
(1.5) 		14.1
(3) 		11.4
(0.4) 		11.6
(0.6) 		14.1
(3) 		7.9
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12894
Sequence Type Exemplar sequence
Representative Public ID T26H5.3 NCBI
Target Description T26H5.3 /REP_DB=WormBase Gene ID /WP=CE18291 /TR=O62384 /GB=CAB04854.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074441 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-239) (srh-239) mRNA, complete cds. 11/11 None
SNAP00000015501 ENSEMBL cdna:SNAP chromosome:CEL140:V:15448672:15449867:1 11/11 None
T26H5.3 ENSEMBL cdna:known chromosome:CEL140:V:15448438:15449867:1 gene:T26H5.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15448437-15449867(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-239
Ensembl T26H5.3
Entrez Gene 188956 Entrez gene
SwissProt O62384 EMBL-EBI
WormBase CE18291 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 0.0
blast CAA16501 Hypothetical protein F08E10.1 [Caenorhabditis elegans] ref|NP_507423.1| Serpentine Receptor, class H family member (srh-235) [Caenorhabditis elegans] 1.0E-150
blast CAA16416 Hypothetical protein Y68A4A.9 [Caenorhabditis elegans] ref|NP_507358.2| Serpentine Receptor, class H family member (srh-236) [Caenorhabditis elegans] 1.0E-145
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-140
blast CAA16501 Hypothetical protein F08E10.1 [Caenorhabditis elegans] ref|NP_507423.1| Serpentine Receptor, class H family member (srh-235) [Caenorhabditis elegans] 1.0E-108
blast CAA16416 Hypothetical protein Y68A4A.9 [Caenorhabditis elegans] ref|NP_507358.2| Serpentine Receptor, class H family member (srh-236) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.9E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506842.1 6 15-37,58-80,90-112,133-152,239-261,268-290
T26H5.3 6 15-37,58-80,90-112,133-152,239-261,268-290
SNAP00000015501 4 15-34,55-74,161-183,190-212
Sequence
Target Sequence 
>C. ELEGANS:179490_AT
gtatgcaatcgttttcagctatattattgtgcctctgtactacttgccaattcaatttct
aattcctgagcaagtaacgggacgggaactttcttgggcgatgctcagttgcatcccgga
gcttcctgatgatggccgggaactgttcgtttttgcaactgaacttattggtccagcaat
cacaatgattgtttctgaaagtgttccaagtattcagtgtggaacatttttgactcttaa
tatttataatttgatatttgcgagacccagtggcatttcaaaaaagacagttcaaatgca
acataggctggtggtcgccttgattatacagacatcctttacactatttcttttcgtggt
ccctgtcaatgttctcattgcatttgtatactttgactatcagaatcagtttcatagcaa
tttgatattttttgctcttgcaattcacggtattgcttccacacttattatggtgttcgc
ccataaaccatatcgagactttgccttttctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCAATCGTTTTCAGCTATATT 458 455 405 Antisense
TTATTGTGCCTCTGTACTACTTGCC 173 679 428 Antisense
GAACTTTCTTGGGCGATGCTCAGTT 679 349 490 Antisense
TCCCGGAGCTTCCTGATGATGGCCG 5 599 518 Antisense
GGGAACTGTTCGTTTTTGCAACTGA 38 495 542 Antisense
TTTGCGAGACCCAGTGGCATTTCAA 440 665 661 Antisense
GCTGGTGGTCGCCTTGATTATACAG 96 295 711 Antisense
ATACAGACATCCTTTACACTATTTC 3 25 730 Antisense
TACACTATTTCTTTTCGTGGTCCCT 248 643 744 Antisense
ACGGTATTGCTTCCACACTTATTAT 114 97 851 Antisense
CATATCGAGACTTTGCCTTTTCTCC 277 215 893 Antisense
Sequence Source Affymetrix Proprietary Database