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[179489_s_at]

Description R102.5A /REP_DB=WormBase Gene ID /WP=CE06333 /TR=Q21891 /GB=CAA94359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 57      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 77      6grp_total > 58      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3022
1 2 3 4 range
A 1095.6
(-1.9)
P 		777.2
(-2.6)
P 		561.1
(-3)
P 		3583
(3)
P 		3022
B 1132.9
(-2)
P 		847.7
(-2.6)
P 		689
(-3)
P 		3400
(3)
P 		2711
C 1560.9
(-0.7)
P 		805.5
(-2.6)
P 		643.3
(-3)
P 		3026.9
(3)
P 		2384
avr 1263.1
(-1.6) 		810.1
(-2.6) 		631.1
(-3) 		3336.6
(3) 		2706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 878
1 2 3 4 5 6 range
A 1386
(-0.4)
P 		1219.2
(-2.1)
P 		1315.3
(-1.1)
P 		1367.6
(-0.6)
P 		1136
(-3)
P 		1716
(3)
P 		580
B 1558
(2.9)
P 		973.5
(-3)
P 		1278.6
(0.1)
P 		1119.8
(-1.5)
P 		1127.9
(-1.4)
P 		1570.7
(3)
P 		597
C 1570.6
(1.6)
P 		901.7
(-3)
P 		1028.2
(-2.1)
P 		1222.2
(-0.8)
P 		1276.4
(-0.4)
P 		1779.8
(3)
P 		878
avr 1504.9
(1.3) 		1031.5
(-3) 		1207.4
(-1.4) 		1236.5
(-1.1) 		1180.1
(-1.6) 		1688.8
(3) 		657
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 398.9
(1)
P 		168.7
(-2.7)
P 		146.7
(-3)
P 		524.5
(3)
P 		378
B 361.3
(-0.9)
P 		209.4
(-2.5)
P 		159.6
(-3)
P 		724.5
(3)
P 		565
C 516.7
(3)
P 		231.6
(-2.8)
P 		224.2
(-3)
P 		510.4
(2.9)
P 		293
avr 425.6
(0.6) 		203.2
(-2.6) 		176.8
(-3) 		586.5
(3) 		410

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 255.5
(-3)
P 		433.6
(3)
P 		286.4
(-2)
P 		346.9
(0.1)
P 		342.8
(-0.1)
P 		417.8
(2.5)
P 		178
B 542.1
(2.1)
P 		324
(-2.4)
P 		310.5
(-2.7)
P 		296.6
(-3)
P 		458.2
(0.4)
P 		585.7
(3)
P 		289
C 582.2
(2.8)
P 		275.1
(-2.5)
P 		261.7
(-2.7)
P 		245.8
(-3)
P 		413
(-0.1)
P 		595.8
(3)
P 		350
avr 459.9
(1.2) 		344.2
(-1.6) 		286.2
(-3) 		296.4
(-2.8) 		404.7
(-0.1) 		533.1
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 179489_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8743
Sequence Type Exemplar sequence
Representative Public ID R102.5A NCBI
Target Description R102.5A /REP_DB=WormBase Gene ID /WP=CE06333 /TR=Q21891 /GB=CAA94359.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069580(11), NM_069579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069580 NCBI Caenorhabditis elegans R102.5a (R102.5) mRNA, complete cds. 11/11 A 
NM_069579 NCBI Caenorhabditis elegans R102.5b (R102.5) mRNA, complete cds. 11/11 A 
SNAP00000034332 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10695442:10697040:-1 11/11 None
GENEFINDER00000034341 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10695442:10697040:-1 11/11 None
R102.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:10695301:10697043:-1 gene:R102.5 11/11 None
R102.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:10695301:10697045:-1 gene:R102.5 11/11 None
R102.5b ENSEMBL cdna:known chromosome:CEL140:IV:10695352:10697040:-1 gene:R102.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10695447-10697046(-) 100.0 100.0
Public Domain and Genome References
Ensembl R102.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94359 Hypothetical protein R102.5a [Caenorhabditis elegans] ref|NP_501981.2| R102.5a [Caenorhabditis elegans] 0.0
blast CAB54290 Hypothetical protein R102.5b [Caenorhabditis elegans] ref|NP_501980.2| R102.5b [Caenorhabditis elegans] 0.0
blast CAB54290 Hypothetical protein R102.5b [Caenorhabditis elegans] ref|NP_501980.2| R102.5b [Caenorhabditis elegans] 1.0E-180
blast CAA94359 Hypothetical protein R102.5a [Caenorhabditis elegans] ref|NP_501981.2| R102.5a [Caenorhabditis elegans] 1.0E-180
Sequence
Target Sequence 
>C. ELEGANS:179489_S_AT
aagactcggctatcgagcagctcaaagtgcaattggctcagagccaacaggtggccgagc
tgtggaagcagggagccgagaaaaacagcaacgctcagtacagtgactcgaagactacta
ttgatagacttttggaggagaactcgaaattgagaaatctggttgatgaagaggttgctc
gccggctcgaagaatctgagcgtcgcaagctggcggaggatcagttgaaacatgcaagag
gaggctctgtctttgatccaccagcctcttttgttgcatcgcagttggcggaaagaacca
catattcattgaatctggaacatgagcttatcactctgagaaaagaattggaggaaacta
aagaagcactgaagaaatctgtagaagagtcgagcaacaaggatgagatagttagtgctc
tgcatgaggaccaacaggagagcacccgcatgctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACTCGGCTATCGAGCAGCTCAA 275 153 776 Antisense
GCAGCTCAAAGTGCAATTGGCTCAG 469 313 792 Antisense
TGGCTCAGAGCCAACAGGTGGCCGA 692 543 809 Antisense
GGTGGCCGAGCTGTGGAAGCAGGGA 231 499 825 Antisense
AGCAACGCTCAGTACAGTGACTCGA 499 75 862 Antisense
GTTGATGAAGAGGTTGCTCGCCGGC 653 437 937 Antisense
GCTCGCCGGCTCGAAGAATCTGAGC 135 299 952 Antisense
GAATCTGAGCGTCGCAAGCTGGCGG 492 329 967 Antisense
GCAAGAGGAGGCTCTGTCTTTGATC 272 321 1009 Antisense
CCTCTTTTGTTGCATCGCAGTTGGC 410 267 1040 Antisense
CAACAGGAGAGCACCCGCATGCTCG 30 189 1207 Antisense
Sequence Source Affymetrix Proprietary Database