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[179488_at]

Description ZK930.7 /REP_DB=WormBase Gene ID /WP=CE16752 /TR=O46027 /GB=CAA94176.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 50      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 113.5
(-3)
A 		135.3
(-1.1)
A 		184.1
(3)
A 		124.4
(-2.1)
A 		71
B 128.2
(-2.3)
A 		214
(3)
A 		185.4
(1.2)
A 		116.4
(-3)
A 		98
C 136
(-1)
A 		197.5
(3)
A 		143.5
(-0.5)
A 		104.5
(-3)
A 		93
avr 125.9
(-2) 		182.3
(3) 		171
(2) 		115.1
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 93.4
(-2.4)
A 		88.1
(-3)
A 		91.4
(-2.6)
A 		112.2
(-0.3)
A 		103.5
(-1.3)
A 		141.8
(3)
A 		54
B 87.1
(-2)
A 		78
(-2.9)
A 		76.7
(-3)
A 		94.4
(-1.3)
A 		137.9
(3)
A 		124.2
(1.7)
A 		61
C 108.5
(0.2)
A 		109.2
(0.3)
A 		127.9
(3)
A 		91.8
(-2.2)
A 		86.5
(-3)
A 		87.9
(-2.8)
A 		41
avr 96.3
(-2) 		91.8
(-3) 		98.7
(-1.4) 		99.5
(-1.2) 		109.3
(1) 		118
(3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 41.3
(1.6)
A 		29.4
(-0.8)
A 		48.1
(3)
A 		18.2
(-3)
A 		30
B 40.9
(0.5)
A 		52.8
(3)
A 		43
(0.9)
A 		24.8
(-3)
A 		28
C 45
(1.2)
A 		56.8
(3)
A 		50
(2)
A 		17.6
(-3)
A 		39
avr 42.4
(2) 		46.3
(2.8) 		47
(3) 		20.2
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 17.2
(-3)
A 		31.3
(1.9)
A 		19.9
(-2.1)
A 		28.5
(0.9)
A 		31.2
(1.9)
A 		34.5
(3)
A 		17
B 30.3
(-1.1)
A 		26
(-1.8)
A 		18.6
(-3)
A 		25
(-2)
A 		56
(3)
A 		46.3
(1.4)
A 		37
C 40.2
(3)
A 		33.3
(1.1)
A 		32.6
(0.9)
A 		18.5
(-3)
A 		28
(-0.4)
A 		29.4
(0)
A 		22
avr 29.2
(-0.8) 		30.2
(-0.3) 		23.7
(-3) 		24
(-2.9) 		38.4
(3) 		36.7
(2.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3115
Sequence Type Exemplar sequence
Representative Public ID ZK930.7 NCBI
Target Description ZK930.7 /REP_DB=WormBase Gene ID /WP=CE16752 /TR=O46027 /GB=CAA94176.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064142 NCBI Caenorhabditis elegans ZK930.7 (ZK930.7) mRNA, complete cds. 11/11 None
SNAP00000000326 ENSEMBL cdna:SNAP chromosome:CEL140:II:11910608:11915232:1 11/11 None
ZK930.7 ENSEMBL cdna:known chromosome:CEL140:II:11914592:11915266:1 gene:ZK930.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11914655-11915263(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK930.7
Entrez Gene 174828 Entrez gene
SwissProt O46027 EMBL-EBI
WormBase CE16752 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 7.0E-83
blast CAA94176 Hypothetical protein ZK930.7 [Caenorhabditis elegans] ref|NP_496543.1| ZK930.7 [Caenorhabditis elegans] 7.0E-76
blast AAC24258 Hypothetical protein C26B2.2 [Caenorhabditis elegans] ref|NP_501345.1| C26B2.2 [Caenorhabditis elegans] 2.0E-49
blast AAC24258 Hypothetical protein C26B2.2 [Caenorhabditis elegans] ref|NP_501345.1| C26B2.2 [Caenorhabditis elegans] 5.0E-43
blast CAE59393 Hypothetical protein CBG02751 [Caenorhabditis briggsae] 6.0E-30
blast CAE59393 Hypothetical protein CBG02751 [Caenorhabditis briggsae] 3.0E-23
Sequence
Target Sequence 
>C. ELEGANS:179488_AT
gtgaatcctcgtcgattttgactcaaaaccagccgacgacaatcgcctcgtctggatttg
tgatgtctaatccgaatgtgaaaagcccatcgcttccgtcgtcggccactaattggaact
cggaatattcggtgaccgaaccgacgatgagcccggcggatcagattctgaaggatagcg
ttgctcgcaagaagaggtcgatggtcgatttgacggagcttaaccagctctacggaaaag
gctataagccgccagccccatctgcacgaacgccaccaacaatttatgagaacttggcaa
ttaatgctccttcgtccccctctgctactgatgcatcgtcggttccgttgacttttatcg
aaaagcatcacgaattcaaaaaactcgtgccatctgggac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAATCCTCGTCGATTTTGACTCA 476 479 68 Antisense
TTGACTCAAAACCAGCCGACGACAA 246 703 85 Antisense
TCGCCTCGTCTGGATTTGTGATGTC 247 599 110 Antisense
AATGTGAAAAGCCCATCGCTTCCGT 547 161 142 Antisense
TCCGTCGTCGGCCACTAATTGGAAC 277 593 162 Antisense
GATGAGCCCGGCGGATCAGATTCTG 572 411 213 Antisense
GAAAAGGCTATAAGCCGCCAGCCCC 675 353 302 Antisense
CTTGGCAATTAATGCTCCTTCGTCC 238 213 360 Antisense
CCTCTGCTACTGATGCATCGTCGGT 295 267 386 Antisense
TCGTCGGTTCCGTTGACTTTTATCG 196 595 403 Antisense
TCAAAAAACTCGTGCCATCTGGGAC 567 625 443 Antisense
Sequence Source Affymetrix Proprietary Database