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[179487_at]

Description T24B8.4 /REP_DB=WormBase Gene ID /WP=CE03712 /TR=Q22715 /GB=CAA92756.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 34      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 39.7
(-3)
A 		67.4
(2.9)
A 		67.7
(3)
A 		47.7
(-1.3)
A 		28
B 61.2
(-3)
A 		107.8
(3)
A 		74.6
(-1.3)
A 		105.8
(2.7)
A 		47
C 47.7
(-3)
A 		117.5
(2.6)
A 		83.2
(-0.2)
A 		122.5
(3)
A 		75
avr 49.5
(-3) 		97.6
(3) 		75.2
(0.2) 		92
(2.3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 133.3
(3)
A 		59.2
(-0.7)
A 		76.3
(0.1)
A 		14.2
(-3)
A 		93.2
(1)
A 		40.7
(-1.7)
A 		119
B 92.4
(1.6)
A 		71.9
(-1)
A 		103
(3)
A 		89.1
(1.2)
A 		56.7
(-3)
A 		94.2
(1.9)
A 		46
C 66
(2.3)
A 		72
(3)
A 		55.8
(1.2)
A 		17.5
(-3)
A 		46.3
(0.2)
A 		54.3
(1.1)
A 		55
avr 97.2
(3) 		67.7
(-0.1) 		78.4
(1) 		40.3
(-3) 		65.4
(-0.4) 		63.1
(-0.6) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 14.4
(1.1)
A 		14.6
(1.3)
A 		17.7
(3)
A 		7
(-3)
A 		11
B 19.5
(-1.6)
A 		26.6
(3)
A 		17.3
(-3)
A 		22.5
(0.4)
A 		9
C 15.8
(-3)
A 		33.8
(3)
A 		29
(1.4)
A 		20.6
(-1.4)
A 		18
avr 16.6
(-3) 		25
(3) 		21.3
(0.4) 		16.7
(-2.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 24.6
(2.1)
A 		21.1
(1.3)
A 		16.6
(0.2)
A 		3.6
(-3)
A 		28.1
(3)
A 		9.9
(-1.5)
A 		25
B 32.1
(1.5)
A 		23.9
(-2.6)
A 		25
(-2)
A 		23.6
(-2.7)
A 		23
(-3)
A 		35.1
(3)
A 		12
C 24.5
(3)
A 		22
(2.3)
A 		14.2
(0.1)
A 		3.5
(-3)
A 		15
(0.3)
A 		18.2
(1.2)
A 		21
avr 27.1
(3) 		22.3
(1.3) 		18.6
(-0) 		10.2
(-3) 		22
(1.2) 		21.1
(0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179487_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3846
Sequence Type Exemplar sequence
Representative Public ID T24B8.4 NCBI
Target Description T24B8.4 /REP_DB=WormBase Gene ID /WP=CE03712 /TR=Q22715 /GB=CAA92756.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063535(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063535 NCBI Caenorhabditis elegans T24B8.4 (T24B8.4) mRNA, complete cds. 11/11 None
T24B8.4 ENSEMBL cdna:known chromosome:CEL140:II:9063597:9071489:-1 gene:T24B8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039891 2/11 Cross Hyb Matching Probes None
GENEFINDER00000039896 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9064955-9071486(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24B8.4
Entrez Gene 174446 Entrez gene
SwissProt Q22715 EMBL-EBI
WormBase CE03712 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92756 Hypothetical protein T24B8.4 [Caenorhabditis elegans] ref|NP_495936.1| T24B8.4 [Caenorhabditis elegans] 0.0
blast CAE59796 Hypothetical protein CBG03256 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003124 EMBL-EBI Actin-binding WH2 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:179487_AT
ctaacaaacctactagcacttccaccaaacagaccacctcatcctcatccactgagcact
ccccatcacccatggctacatcctctcaaaaaagggatagtatcagtaatactgatgtta
agaagaagacaccatatggtcaaccaatgtcaggaacagtcgctgatcgagcaaataagt
tccgtcaacagttgcaagctgataatgaaaaaggaaagaaaccatggcagcatcccttca
tgtcttccaacgtgcctccatcttccctttctgctcgtgagcagctcttctcctcctctt
cgttgccacgtcatcatcgtaactcttcaaaccaaaacgtcatcaacgttccaataagtg
ctccgtggtattcacgggaccctatcgtcaacccagaaccgccaagtgttgggtcccgtc
ggccatccaaacagtcaaccaatccgtatcgggtatcaatttatttgtcttacattctct
ccccctctgtcatttcttcctttgtcggcaaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTAACAAACCTACTAGCACTTCCAC 233 227 2171 Antisense
CCATGGCTACATCCTCTCAAAAAAG 211 271 2240 Antisense
GAAAGAAACCATGGCAGCATCCCTT 602 357 2384 Antisense
TTCTGCTCGTGAGCAGCTCTTCTCC 482 693 2439 Antisense
GTCATCATCGTAACTCTTCAAACCA 372 467 2480 Antisense
AACGTTCCAATAAGTGCTCCGTGGT 159 141 2515 Antisense
GTATTCACGGGACCCTATCGTCAAC 710 447 2538 Antisense
CAGAACCGCCAAGTGTTGGGTCCCG 464 203 2564 Antisense
AAACAGTCAACCAATCCGTATCGGG 588 125 2599 Antisense
ATTTATTTGTCTTACATTCTCTCCC 614 15 2629 Antisense
TCATTTCTTCCTTTGTCGGCAAAAA 17 619 2660 Antisense
Sequence Source Affymetrix Proprietary Database