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[179486_at]

Description C38C6.5 /REP_DB=WormBase Gene ID /WP=CE15697 /TR=O45301 /GB=CAB07565.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 38      4grp_total > 27      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 27.4
(-1.8)
A 		35.5
(-1)
A 		15.6
(-3)
A 		74.3
(3)
A 		59
B 33.6
(1.5)
A 		41.8
(3)
A 		7.4
(-3)
A 		42
(3)
A 		35
C 30.2
(-1)
A 		61.9
(1.6)
A 		5.1
(-3)
A 		79.6
(3)
A 		75
avr 30.4
(-0.7) 		46.4
(1) 		9.4
(-3) 		65.3
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 49
(3)
A 		35.1
(1.1)
A 		22.8
(-0.6)
A 		34.2
(1)
A 		5.3
(-3)
A 		48.4
(2.9)
A 		44
B 44.2
(3)
A 		30.8
(1)
A 		6.4
(-2.7)
A 		4.3
(-3)
A 		24.5
(0)
A 		41.3
(2.6)
A 		40
C 39.7
(0.8)
A 		53.2
(2.3)
A 		27.8
(-0.5)
A 		5.4
(-3)
A 		55.9
(2.6)
A 		59.1
(3)
P 		54
avr 44.3
(2.1) 		39.7
(1.3) 		19
(-2.2) 		14.6
(-3) 		28.6
(-0.6) 		49.6
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10
(2.2)
A 		7.7
(0.2)
A 		4.1
(-3)
A 		10.9
(3)
A 		7
B 10.7
(3)
A 		10.3
(2.7)
A 		1.7
(-3)
A 		8.9
(1.8)
A 		9
C 10
(0.1)
A 		17.8
(3)
A 		1.8
(-3)
A 		13.4
(1.4)
A 		16
avr 10.2
(1.9) 		11.9
(3) 		2.5
(-3) 		11.1
(2.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 9
(1.1)
A 		12.5
(3)
A 		5
(-1.1)
A 		8.7
(0.9)
A 		1.6
(-3)
A 		11.8
(2.6)
A 		11
B 15.4
(3)
A 		10.2
(0.8)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		10
(0.7)
A 		15.4
(3)
A 		14
C 14.7
(1.4)
A 		16.2
(1.8)
A 		7.1
(-1.1)
A 		1.1
(-3)
A 		18.1
(2.5)
A 		19.8
(3)
P 		19
avr 13
(1.7) 		13
(1.7) 		4.5
(-2.6) 		3.6
(-3) 		9.9
(0.1) 		15.7
(3) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3035
Sequence Type Exemplar sequence
Representative Public ID C38C6.5 NCBI
Target Description C38C6.5 /REP_DB=WormBase Gene ID /WP=CE15697 /TR=O45301 /GB=CAB07565.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064639(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064639 NCBI Caenorhabditis elegans C38C6.5 (C38C6.5) mRNA, complete cds. 10/11 None
GENEFINDER00000016888 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:14630424:14632527:-1 11/11 None
C38C6.5 ENSEMBL cdna:known chromosome:CEL140:II:14630444:14632527:-1 gene:C38C6.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016879 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14630420-14632524(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C38C6.5
Entrez Gene 183307 Entrez gene
SwissProt O45301 EMBL-EBI
WormBase CE35424 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
17148 negative regulation of protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
30598 rRNA N-glycosylase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07565 Hypothetical protein C38C6.5 [Caenorhabditis elegans] ref|NP_497040.2| C38C6.5 [Caenorhabditis elegans] 0.0
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 5.0E-82
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 5.0E-56
blast CAB63386 Hypothetical protein Y51H4A.23 [Caenorhabditis elegans] ref|NP_502980.1| Y51H4A.23 [Caenorhabditis elegans] 4.0E-30
blast CAB61154 Hypothetical protein Y51H4A.22 [Caenorhabditis elegans] ref|NP_502979.2| Y51H4A.22 [Caenorhabditis elegans] 2.0E-27
Sequence
Target Sequence 
>C. ELEGANS:179486_AT
aatggctgactataccgctgagcaattcatatctttctaccggaaattcctaatgatgtg
gagaccaaaggatggggatacggactttttgaaggacgtggaaaacgaaaaactgtttat
cactaacttggagtggttctgtccagtgaccgttgatctcatggatctttcacttattgc
gattcgcgaagttgttgcagagaagcttgacgaagttgcagcggactatacaccaacgtt
cacattcttctcatccgtggattttttgaatcggttcaccaaaaatctgaataacttgaa
aaccgaaagttgtctgaacggatccatggtgtccatggatcatttccgtgaacgatctcg
aagtagttttggatcatcaacaaattcctataacatcagtgttcattcttaccgtgttca
atatgaggacattgtacttcctgctgaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGCTGACTATACCGCTGAGCAA 188 163 762 Antisense
TGAGCAATTCATATCTTTCTACCGG 503 569 780 Antisense
TTCTGTCCAGTGACCGTTGATCTCA 608 691 898 Antisense
GGATCTTTCACTTATTGCGATTCGC 617 511 924 Antisense
GAAGTTGCAGCGGACTATACACCAA 20 337 973 Antisense
TATACACCAACGTTCACATTCTTCT 420 659 988 Antisense
CACATTCTTCTCATCCGTGGATTTT 198 197 1002 Antisense
GTCTGAACGGATCCATGGTGTCCAT 516 471 1073 Antisense
GGTGTCCATGGATCATTTCCGTGAA 708 495 1089 Antisense
ATCAGTGTTCATTCTTACCGTGTTC 573 29 1156 Antisense
GGACATTGTACTTCCTGCTGAAGCG 653 525 1188 Antisense
Sequence Source Affymetrix Proprietary Database