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[179484_at]

Description Y6E2A.2 /REP_DB=WormBase Gene ID /WP=CE16579 /TR=O45972 /GB=CAA15966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 01      6grp_cgc > 40      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 17.6
(-3)
A 		22.3
(-2.6)
A 		18.3
(-2.9)
A 		81.3
(3)
P 		64
B 8.7
(-3)
A 		11.2
(-2.8)
A 		22.2
(-2.1)
A 		98.2
(3)
P 		90
C 26.2
(-1.7)
A 		5.6
(-3)
A 		21.2
(-2)
A 		99.9
(3)
P 		94
avr 17.5
(-2.7) 		13
(-3) 		20.6
(-2.4) 		93.1
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 6.9
(-2)
A 		20.8
(1)
A 		23.1
(1.5)
A 		30.2
(3)
A 		5.3
(-2.3)
A 		2.1
(-3)
A 		28
B 33
(2.2)
A 		23.5
(0.5)
A 		4.6
(-3)
A 		37.2
(3)
A 		29.1
(1.5)
A 		6.9
(-2.6)
A 		33
C 32.5
(0.2)
A 		59.2
(3)
A 		1.7
(-3)
A 		35
(0.5)
A 		3.9
(-2.8)
A 		18.1
(-1.3)
A 		58
avr 24.1
(0.6) 		34.5
(3) 		9.8
(-2.8) 		34.1
(2.9) 		12.8
(-2.1) 		9
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.4
(-1.6)
A 		4.8
(-3)
A 		4.8
(-3)
A 		11.9
(3)
P 		7
B 2.8
(-3)
A 		2.8
(-3)
A 		5.2
(-2.2)
A 		20.9
(3)
P 		18
C 8.7
(-0.2)
A 		1.6
(-3)
A 		7.4
(-0.7)
A 		16.8
(3)
P 		15
avr 6
(-1.7) 		3.1
(-3) 		5.8
(-1.8) 		16.5
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.3
(-2.3)
A 		7.4
(2.8)
A 		5
(0.8)
A 		7.7
(3)
A 		1.6
(-2.1)
A 		0.5
(-3)
A 		7
B 11.5
(2.8)
A 		7.8
(0.8)
A 		1.1
(-3)
A 		9.8
(1.9)
A 		11.8
(3)
A 		2.6
(-2.2)
A 		11
C 12.1
(1)
A 		18.1
(3)
A 		0.4
(-3)
A 		7
(-0.8)
A 		1.3
(-2.7)
A 		6.1
(-1.1)
A 		18
avr 8.3
(1.1) 		11.1
(3) 		2.2
(-3) 		8.2
(1) 		4.9
(-1.2) 		3.1
(-2.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179484_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14399
Sequence Type Exemplar sequence
Representative Public ID Y6E2A.2 NCBI
Target Description Y6E2A.2 /REP_DB=WormBase Gene ID /WP=CE16579 /TR=O45972 /GB=CAA15966.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074507 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-101) (str-101) mRNA, complete cds. 11/11 None
GENEFINDER00000013598 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15713371:15715248:-1 11/11 None
Y6E2A.2 ENSEMBL cdna:known chromosome:CEL140:V:15713462:15714582:-1 gene:Y6E2A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013589 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15713461-15714582(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-101
Ensembl Y6E2A.2
Entrez Gene 189373 Entrez gene
SwissProt O45972 EMBL-EBI
WormBase CE16579 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA15966 Hypothetical protein Y6E2A.2 [Caenorhabditis elegans] ref|NP_506908.1| Seven TM Receptor family member (str-101) [Caenorhabditis elegans] 1.0E-178
blast CAA15966 Hypothetical protein Y6E2A.2 [Caenorhabditis elegans] ref|NP_506908.1| Seven TM Receptor family member (str-101) [Caenorhabditis elegans] 1.0E-128
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 1.0E-105
blast CAA15965 Hypothetical protein Y6E2A.1 [Caenorhabditis elegans] ref|NP_506907.1| Y6E2A.1 [Caenorhabditis elegans] 1.0E-102
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 5.0E-95
blast CAB05513 Hypothetical protein F44G3.1 [Caenorhabditis elegans] ref|NP_507058.1| Seven TM Receptor family member (str-103) [Caenorhabditis elegans] 4.0E-85
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.7E-7
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 4.5E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-26
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.5E-9
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.0E-26
Pfam IPR007883 EMBL-EBI Protein of unknown function DUF713 1.2E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506908.1 7 15-32,45-67,93-115,128-150,204-226,258-280,285-307
Y6E2A.2 7 15-32,45-67,93-115,128-150,204-226,258-280,285-307
GENEFINDER00000013598 5 137-159,180-202,252-274,306-328,333-355
Sequence
Target Sequence 
>C. ELEGANS:179484_AT
gtgtccttctcaactttcaagattttcggcaaagttcgttccaatatgggcgatcattgt
agttactaactcatctgtgtggtttttcacaagttatcacttaaatggcccatcacaatt
aaaagatctacatgtatacccagaatttctaaaatcgtactgcttgaaaccggatgactt
tgcatatgcgtcagctcaatacttttatgaagatcatgtctctgaaggggtgaaatttca
ttttctatctctttttgcaactggagttatggctgcaattatggtttttacactgagtgc
aatattttattttggaatacaaacttatatccatctgtatagactcagttctatagctgg
acttgataatcgagaacttcaaaatcaactcttccgaacactagttgtgcaaacagtcat
cccatttttcttcatgtattttcccgtttcatgtatgatcttactgccgttatttggtat
caaagttaaggaaataggaaatattgctccaatttttgctgcaatatatccttgctttga
accacttgttgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCCTTCTCAACTTTCAAGATTT 285 487 372 Antisense
GTTACTAACTCATCTGTGTGGTTTT 665 435 433 Antisense
AGTTATCACTTAAATGGCCCATCAC 662 63 463 Antisense
CGTACTGCTTGAAACCGGATGACTT 198 247 527 Antisense
GCATATGCGTCAGCTCAATACTTTT 15 309 553 Antisense
GACTCAGTTCTATAGCTGGACTTGA 676 371 713 Antisense
TCAAAATCAACTCTTCCGAACACTA 224 629 750 Antisense
TGCAAACAGTCATCCCATTTTTCTT 28 577 779 Antisense
TTTCTTCATGTATTTTCCCGTTTCA 695 671 798 Antisense
GTATGATCTTACTGCCGTTATTTGG 577 455 824 Antisense
TCCTTGCTTTGAACCACTTGTTGCT 358 591 900 Antisense
Sequence Source Affymetrix Proprietary Database