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[179482_at]

Description F07A5.2 /REP_DB=WormBase Gene ID /WP=CE05555 /TR=Q19138 /GB=CAA96617.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 20      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 29.5
(-1.3)
A 		24.7
(-1.6)
A 		2.7
(-3)
A 		95.4
(3)
A 		93
B 44
(-0.4)
A 		55
(3)
A 		39.7
(-1.7)
A 		35.3
(-3)
A 		20
C 42.7
(0.5)
A 		26.5
(-1.1)
A 		5.8
(-3)
A 		69.7
(3)
A 		64
avr 38.7
(-0.3) 		35.4
(-0.7) 		16.1
(-3) 		66.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1091
1 2 3 4 5 6 range
A 6.5
(-3)
A 		7.6
(-3)
A 		51.1
(-2.8)
A 		147.7
(-2.2)
P 		380.3
(-0.9)
P 		1097.5
(3)
P 		1091
B 33.3
(-2.8)
A 		9.5
(-3)
A 		19.1
(-2.9)
A 		77.7
(-2.3)
P 		399.5
(0.8)
P 		627.7
(3)
P 		618
C 6.5
(-3)
A 		23.1
(-2.9)
A 		9.7
(-3)
A 		106.9
(-2.1)
M 		412.7
(0.5)
P 		700.7
(3)
P 		694
avr 15.4
(-3) 		13.4
(-3) 		26.6
(-2.9) 		110.8
(-2.3) 		397.5
(-0.1) 		808.6
(3) 		795
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 10.8
(1.6)
A 		5.4
(-0.9)
A 		0.7
(-3)
A 		14
(3)
A 		13
B 14
(3)
A 		13.6
(2.6)
A 		9.2
(-1.4)
A 		7.5
(-3)
A 		7
C 14.1
(3)
A 		7.6
(-0.2)
A 		2
(-3)
A 		11.7
(1.8)
A 		12
avr 13
(3) 		8.9
(0.3) 		4
(-3) 		11.1
(1.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 266
1 2 3 4 5 6 range
A 1.2
(-3)
A 		2.7
(-3)
A 		11.1
(-2.8)
A 		37.5
(-2.2)
P 		114.8
(-0.4)
P 		267.2
(3)
P 		266
B 11.6
(-2.8)
A 		3.2
(-3)
A 		4.6
(-3)
A 		20.6
(-2.5)
P 		162.3
(1.1)
P 		234.1
(3)
P 		231
C 2.4
(-3)
A 		7
(-2.9)
A 		2.5
(-3)
A 		21.5
(-2.5)
M 		133.5
(0.4)
P 		234.6
(3)
P 		232
avr 5.1
(-3) 		4.3
(-3) 		6.1
(-3) 		26.5
(-2.4) 		136.9
(0.3) 		245.3
(3) 		241
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179482_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2140
Sequence Type Exemplar sequence
Representative Public ID F07A5.2 NCBI
Target Description F07A5.2 /REP_DB=WormBase Gene ID /WP=CE05555 /TR=Q19138 /GB=CAA96617.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059679(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059679 NCBI Caenorhabditis elegans F07A5.2 (F07A5.2) mRNA, complete cds. 11/11 None
SNAP00000034782 ENSEMBL cdna:SNAP chromosome:CEL140:I:7360270:7361774:1 11/11 None
GENEFINDER00000034792 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7360637:7361774:1 11/11 None
F07A5.2 ENSEMBL cdna:known chromosome:CEL140:I:7360637:7361785:1 gene:F07A5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073451 1/11 Cross Hyb Matching Probes A 
T19B10.5 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7360567-7361705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07A5.2
Entrez Gene 172489 Entrez gene
SwissProt Q19138 EMBL-EBI
WormBase CE05555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA96617 Hypothetical protein F07A5.2 [Caenorhabditis elegans] ref|NP_492080.1| F07A5.2 [Caenorhabditis elegans] 1.0E-121
blast CAA96617 Hypothetical protein F07A5.2 [Caenorhabditis elegans] ref|NP_492080.1| F07A5.2 [Caenorhabditis elegans] 1.0E-114
blast CAE71267 Hypothetical protein CBG18149 [Caenorhabditis briggsae] 1.0E-45
blast CAE58570 Hypothetical protein CBG01735 [Caenorhabditis briggsae] 7.0E-30
Sequence
Target Sequence 
>C. ELEGANS:179482_AT
gagagtcgacgcaatagatccaacaaatcaccaggttccagtcgtaaaagcattctgaag
aaatctccgatgaaaaaaagaagatctctttcgagaaaatctttaccaaagaaggagcat
attcctccagttcaaaagtttgcaattatcaagaatccagctgctcgtaatcaagttcgt
ggatttgttgctgaatacgcacaagatccagaatttgaagcttttgagcttttggttgac
ggaattccatttgttgctctctctctgatgaatgctcatccagatcttcgtggaagattc
aaacctgttccaccaccaacaccgatgaagaagcatactccaggtatcaatagcccacga
aaacgtcctttgcgtcgtgaatctatttcttccgttaactcgaaaagtgttcgtttcact
gatgagggatcttctttttcgaaaagagctagaaaatcttcatccggagatgtcgattca
tcgattcgtgagcttggagagacagtatcggatgccatgattgacactggtcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTCGACGCAATAGATCCAACA 614 395 364 Antisense
AACAAATCACCAGGTTCCAGTCGTA 416 135 385 Antisense
AATCCAGCTGCTCGTAATCAAGTTC 185 167 517 Antisense
GCTTTTGAGCTTTTGGTTGACGGAA 376 303 583 Antisense
TTGCTCTCTCTCTGATGAATGCTCA 279 703 617 Antisense
ATGAATGCTCATCCAGATCTTCGTG 182 43 631 Antisense
GGAAGATTCAAACCTGTTCCACCAC 536 529 655 Antisense
TACTCCAGGTATCAATAGCCCACGA 290 647 699 Antisense
TAGCCCACGAAAACGTCCTTTGCGT 469 649 714 Antisense
GCGTCGTGAATCTATTTCTTCCGTT 25 293 735 Antisense
GATGCCATGATTGACACTGGTCGCC 440 415 874 Antisense
Sequence Source Affymetrix Proprietary Database