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[179481_at]

Description F26D2.7 /REP_DB=WormBase Gene ID /WP=CE17704 /TR=O62184 /GB=CAB04176.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 13      6grp_total_sub > Hat      6grp_cgc > 55      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 26.2
(-2.5)
A 		15.8
(-3)
A 		17.7
(-2.9)
A 		141.2
(3)
M 		125
B 53.8
(3)
A 		27.1
(-0.6)
A 		22.1
(-1.2)
A 		8.9
(-3)
A 		45
C 67.9
(0.9)
A 		32.1
(-1.3)
A 		5.3
(-3)
A 		102
(3)
A 		97
avr 49.3
(-0) 		25
(-2.1) 		15
(-3) 		84
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 10
(-2.6)
A 		37.5
(0.5)
A 		17.2
(-1.8)
A 		28.8
(-0.5)
A 		6.6
(-3)
A 		59.5
(3)
A 		53
B 6.6
(-2.3)
A 		26.1
(1.3)
A 		11.5
(-1.4)
A 		2.7
(-3)
A 		5
(-2.6)
A 		35.3
(3)
A 		33
C 5.4
(-2.8)
A 		59.5
(3)
M 		49.8
(2)
A 		41
(1)
A 		11.3
(-2.2)
A 		3.4
(-3)
A 		56
avr 7.3
(-3) 		41
(3) 		26.2
(0.4) 		24.2
(0) 		7.6
(-2.9) 		32.7
(1.5) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 9.5
(-0.9)
A 		3.4
(-3)
A 		4.6
(-2.6)
A 		20.7
(3)
M 		17
B 17.2
(3)
A 		6.7
(-1.1)
A 		5.1
(-1.7)
A 		1.9
(-3)
A 		15
C 22.5
(3)
A 		9.2
(-0.9)
A 		1.8
(-3)
A 		17.2
(1.5)
A 		21
avr 16.4
(3) 		6.4
(-1.8) 		3.8
(-3) 		13.3
(1.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.8
(-3)
A 		13.3
(2.4)
A 		3.7
(-2.1)
A 		7.3
(-0.4)
A 		2
(-2.9)
A 		14.5
(3)
A 		13
B 2.3
(-2.2)
A 		8.7
(0.8)
A 		2.8
(-2)
A 		0.7
(-3)
A 		2
(-2.4)
A 		13.2
(3)
A 		13
C 2
(-2.7)
A 		18.2
(3)
M 		12.7
(1.1)
A 		8.2
(-0.5)
A 		3.7
(-2.1)
A 		1.1
(-3)
A 		17
avr 2
(-3) 		13.4
(3) 		6.4
(-0.7) 		5.4
(-1.2) 		2.6
(-2.7) 		9.6
(1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179481_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13907
Sequence Type Exemplar sequence
Representative Public ID F26D2.7 NCBI
Target Description F26D2.7 /REP_DB=WormBase Gene ID /WP=CE17704 /TR=O62184 /GB=CAB04176.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074748(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074748 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-55) (str-55) mRNA, complete cds. 11/11 None
F26D2.7 ENSEMBL cdna:known chromosome:CEL140:V:16418277:16419697:-1 gene:F26D2.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16418276-16419697(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol str-55
Ensembl F26D2.7
Entrez Gene 184963 Entrez gene
SwissProt O62184 EMBL-EBI
WormBase CE17704 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04176 Hypothetical protein F26D2.7 [Caenorhabditis elegans] ref|NP_507149.1| Seven TM Receptor family member (str-55) [Caenorhabditis elegans] 0.0
blast CAB03302 Hypothetical protein T06C12.2 [Caenorhabditis elegans] ref|NP_506965.1| Seven TM Receptor family member (str-57) [Caenorhabditis elegans] 1.0E-134
blast CAB03303 Hypothetical protein T06C12.3 [Caenorhabditis elegans] ref|NP_506966.1| Seven TM Receptor family member (str-56) [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507149.1 7 10-32,44-66,89-111,131-153,195-217,245-267,282-304
F26D2.7 7 10-32,44-66,89-111,131-153,195-217,245-267,282-304
Sequence
Target Sequence 
>C. ELEGANS:179481_AT
gatttcttacttgttgattcctactatagtttatagcgttgcatttaatcagatatttac
acccaccaatgcttccgatgattatttgagagaagttattcgaaaaaactttgactttga
aatttcatcagtcgcacgatttatcatgatgccttataatgaaaacaataccatccaatg
gaaagccctttcacttctcatatcagcgggaattctaatttgtttccaatatttcatttt
tgtatttttcggcctcaaaatatattttaatatgaagcttagactgaaaagtttctcagc
ttgccaggaaaaattccaatcgcagttgttcaaagcgctcgttgctcaaaccattggccc
cacaatatttctgattttgccttctgcgccattctttgtgacaactctactatcgccata
taccaatatggagattaattggcaaaccgggtggttgtgttcgttttttgaattgtatcc
aatatctgataatatcgcatttatgttgattgtttccgagtaccgaaattatattaaaag
taaattggtctgcaaaactagaagagaggtcggcagcaagatttcaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCTTACTTGTTGATTCCTACT 464 427 411 Antisense
ATCAGATATTTACACCCACCAATGC 666 27 458 Antisense
CCCACCAATGCTTCCGATGATTATT 1 259 472 Antisense
ATGGAAAGCCCTTTCACTTCTCATA 227 53 588 Antisense
TTCATTTTTGTATTTTTCGGCCTCA 385 689 643 Antisense
GAAAAGTTTCTCAGCTTGCCAGGAA 77 355 696 Antisense
CAAAGCGCTCGTTGCTCAAACCATT 167 193 741 Antisense
AACCATTGGCCCCACAATATTTCTG 57 147 759 Antisense
GCGCCATTCTTTGTGACAACTCTAC 691 287 796 Antisense
AACTCTACTATCGCCATATACCAAT 569 139 813 Antisense
GAGGTCGGCAGCAAGATTTCAATTC 592 401 976 Antisense
Sequence Source Affymetrix Proprietary Database