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[179480_at]

Description D1025.3 /REP_DB=WormBase Gene ID /WP=CE17611 /TR=O62123 /GB=CAB05473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 32      4grp_total > 31      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 114.5
(3)
A 		91.9
(-1)
A 		80.3
(-3)
A 		114
(2.9)
A 		34
B 58
(0.7)
A 		71.1
(3)
A 		60.5
(1.1)
A 		37.2
(-3)
A 		34
C 103.6
(3)
A 		41.8
(-3)
A 		62.9
(-1)
A 		96.4
(2.3)
A 		62
avr 92
(3) 		68.3
(-2.9) 		67.9
(-3) 		82.5
(0.6) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 138.3
(2)
A 		134
(1.8)
A 		161
(3)
P 		97.8
(0.3)
A 		75.2
(-0.7)
A 		20.5
(-3)
A 		141
B 145.5
(2.1)
A 		124.2
(1.1)
A 		164.4
(3)
M 		81.4
(-0.9)
A 		53
(-2.3)
A 		37.2
(-3)
A 		127
C 110.5
(0)
A 		168
(3)
P 		161.8
(2.7)
A 		136.2
(1.4)
A 		58.2
(-2.7)
A 		51.6
(-3)
A 		116
avr 131.4
(1.5) 		142.1
(2) 		162.4
(3) 		105.1
(0.3) 		62.1
(-1.8) 		36.4
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 41.7
(3)
A 		20
(-2.2)
A 		21
(-2)
A 		16.7
(-3)
A 		25
B 18.5
(3)
A 		17.6
(2.5)
A 		14
(0.5)
A 		7.9
(-3)
A 		11
C 34.3
(3)
A 		12
(-3)
A 		21.9
(-0.3)
A 		16.2
(-1.9)
A 		22
avr 31.5
(3) 		16.5
(-2) 		19
(-1.2) 		13.6
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 25.5
(-0.1)
A 		47.7
(3)
A 		35.1
(1.2)
P 		24.8
(-0.2)
A 		22.7
(-0.5)
A 		5
(-3)
A 		43
B 50.6
(3)
A 		41.3
(1.5)
A 		39.9
(1.3)
M 		21.6
(-1.7)
A 		21.5
(-1.8)
A 		13.9
(-3)
A 		37
C 41
(1.2)
A 		51.2
(3)
P 		41.2
(1.2)
A 		27.4
(-1.2)
A 		18.8
(-2.7)
A 		17.3
(-3)
A 		34
avr 39
(1.7) 		46.7
(3) 		38.7
(1.6) 		24.6
(-0.8) 		21
(-1.5) 		12.1
(-3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179480_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17935
Sequence Type Exemplar sequence
Representative Public ID D1025.3 NCBI
Target Description D1025.3 /REP_DB=WormBase Gene ID /WP=CE17611 /TR=O62123 /GB=CAB05473.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078012 NCBI Caenorhabditis elegans D1025.3 (D1025.3) mRNA, complete cds. 11/11 None
SNAP00000016219 ENSEMBL cdna:SNAP chromosome:CEL140:X:14511225:14512829:-1 11/11 None
GENEFINDER00000016235 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14511225:14512829:-1 11/11 None
D1025.3 ENSEMBL cdna:known chromosome:CEL140:X:14511225:14514016:-1 gene:D1025.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14511224-14514016(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1025.3
Entrez Gene 183903 Entrez gene
SwissProt O62123 EMBL-EBI
WormBase CE17611 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6418 tRNA aminoacylation for protein translation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4812 tRNA ligase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05473 Hypothetical protein D1025.3 [Caenorhabditis elegans] ref|NP_510413.1| D1025.3 [Caenorhabditis elegans] 0.0
blast CAB60396 Hypothetical protein Y60A3A.8 [Caenorhabditis elegans] ref|NP_507862.2| Y60A3A.8 [Caenorhabditis elegans] 9.0E-21
blast CAB60396 Hypothetical protein Y60A3A.8 [Caenorhabditis elegans] ref|NP_507862.2| Y60A3A.8 [Caenorhabditis elegans] 1.0E-20
blast CAE73131 Hypothetical protein CBG20515 [Caenorhabditis briggsae] 9.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-6
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 1.1E-6
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.5E-6
Sequence
Target Sequence 
>C. ELEGANS:179480_AT
ttatatcagttttgtcacgaccggagagaaaatattggagtacattggactcctaagttt
tgaacatctgaatcatatcagaataaaaaatacgaatttcaaccaagaacagttggaaca
attcgttgctatggaccaatggaagcatgcaaagtcgatgttcttagaggatctcaatga
tatttcagtggctcagttctctcactttgaaacattctggacaaatgtaacaagattgga
accagttgatgcctggaatgtaataaagagttacatcaaacggaattcacctcgcggagc
atttttccatgtaggaactgcaaatccaatcgagccaagtcagatatcagatctgttcga
cgtggaagtgaaaaatgagccaattgatactccttggccatcatcccaagtgttgcacac
ccaaaagttctgtctgccatctgaagaccacgtgctcattgtgcttattctaaacaatgt
gctcaccggaagaatatgtcatctaaaccatctagccgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATATCAGTTTTGTCACGACCGGA 220 677 573 Antisense
GCTCAGTTCTCTCACTTTGAAACAT 564 301 763 Antisense
CATCAAACGGAATTCACCTCGCGGA 577 211 846 Antisense
ACCTCGCGGAGCATTTTTCCATGTA 600 83 861 Antisense
GCAAATCCAATCGAGCCAAGTCAGA 64 319 892 Antisense
CAATTGATACTCCTTGGCCATCATC 458 179 953 Antisense
TGGCCATCATCCCAAGTGTTGCACA 289 545 967 Antisense
TGCACACCCAAAAGTTCTGTCTGCC 630 577 986 Antisense
CTGTCTGCCATCTGAAGACCACGTG 601 239 1002 Antisense
GACCACGTGCTCATTGTGCTTATTC 69 385 1018 Antisense
ATGTCATCTAAACCATCTAGCCGAA 188 49 1068 Antisense
Sequence Source Affymetrix Proprietary Database