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[179479_at]

Description F55C9.9 /REP_DB=WormBase Gene ID /WP=CE18741 /TR=Q9XUZ2 /GB=CAB04470.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 11      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 57.6
(-2)
P 		49.5
(-2.5)
A 		39.8
(-3)
M 		146.2
(3)
P 		106
B 56.4
(1.2)
P 		37.9
(-0.6)
A 		13.9
(-3)
A 		74.3
(3)
P 		60
C 56.5
(-2.3)
P 		77.4
(-1.6)
M 		38.6
(-3)
M 		200.9
(3)
P 		162
avr 56.8
(-1.6) 		54.9
(-1.7) 		30.8
(-3) 		140.5
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 135.8
(3)
P 		50.4
(-2.1)
P 		55.8
(-1.8)
P 		37.3
(-2.9)
A 		36.1
(-3)
A 		123.2
(2.2)
P 		100
B 79.8
(-0.3)
P 		60.1
(-1.6)
P 		59
(-1.7)
P 		76.5
(-0.5)
P 		39.2
(-3)
A 		130.2
(3)
P 		91
C 58.5
(-1.8)
P 		105.1
(3)
P 		58.5
(-1.8)
A 		62.8
(-1.4)
M 		47.1
(-3)
A 		102.2
(2.7)
P 		58
avr 91.4
(0.9) 		71.9
(-0.6) 		57.8
(-1.7) 		58.9
(-1.6) 		40.8
(-3) 		118.5
(3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 21
(2.8)
P 		10.7
(-2.8)
A 		10.4
(-3)
M 		21.4
(3)
P 		11
B 18
(3)
P 		9.3
(-0.5)
A 		3.2
(-3)
A 		15.8
(2.1)
P 		15
C 18.7
(-1.5)
P 		22.3
(-0.4)
M 		13.5
(-3)
M 		33.9
(3)
P 		20
avr 19.2
(1.2) 		14.1
(-0.9) 		9
(-3) 		23.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 25
(1.5)
P 		17.9
(-0.5)
P 		12.2
(-2.2)
P 		9.5
(-3)
A 		10.9
(-2.6)
A 		30
(3)
P 		21
B 27.8
(-0.6)
P 		20
(-2)
P 		14.3
(-3)
P 		20.3
(-2)
P 		15.9
(-2.7)
A 		48.6
(3)
P 		34
C 21.7
(-0.5)
P 		32.1
(2.4)
P 		14.9
(-2.4)
A 		12.6
(-3)
M 		15.2
(-2.3)
A 		34.2
(3)
P 		22
avr 24.8
(-0.2) 		23.3
(-0.6) 		13.8
(-3) 		14.1
(-2.9) 		14
(-2.9) 		37.6
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179479_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13455
Sequence Type Exemplar sequence
Representative Public ID F55C9.9 NCBI
Target Description F55C9.9 /REP_DB=WormBase Gene ID /WP=CE18741 /TR=Q9XUZ2 /GB=CAB04470.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028813 NCBI Caenorhabditis elegans F55C9.13 (F55C9.13) mRNA, complete cds. 11/11 None
GENEFINDER00000026286 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19304655:19306301:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000010485 1/11 Cross Hyb Matching Probes None
SNAP00000026277 1/11 Cross Hyb Matching Probes None
GENEFINDER00000026282 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19303250-19306301(-) 81.15 98.51
Public Domain and Genome References
Gene Title
Entrez Gene 3565062 Entrez gene
SwissProt Q564T6 EMBL-EBI
WormBase CE18741 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 0.0
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 1.0E-137
blast CAB04471 Hypothetical protein F55C9.8 [Caenorhabditis elegans] ref|NP_507757.1| F55C9.8 [Caenorhabditis elegans] 1.0E-134
blast CAE53731 Hypothetical protein C43D7.9 [Caenorhabditis elegans] ref|NP_001023705.1| C43D7.9 [Caenorhabditis elegans] 1.0E-113
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-8
Sequence
Target Sequence 
>C. ELEGANS:179479_AT
tttccagctgttttcttcaactatttctttcgaaatccacttggtatcatccgatattaa
gcgcacaccgaattcaattgaatcttttaattccctccactgatttttcctgtgagcacc
tacatgtaaaccaaaaaatgagttcaagggatttgaacttatttttaaaacgctggatga
gaggagagtacaagtctcttaaaagcctacgctgccatgtgggatctgaggcgagtgcgg
atgagattttcaaagacgtaaagtataaggaagagaatgtcaaaagtgtaatacaatgga
attggggatttatgaaagtcaaaagagtcatctaccgatttgatggaacacgggcgactt
gtgttctgaaatatggatatgtaaccttcgacgttttaaagccccgcctttttcttgtcc
cctcacggagaaaaggcgaaaattttgaccccaaccaatatcaggccgccgacatttcac
gggttccgcgcgccgctatgtttaactcgcagcaggcggagacagctcgccacgcccaca
gcgagttgaaaatagcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCCAGCTGTTTTCTTCAACTATT 654 669 431 Antisense
TTGAATCTTTTAATTCCCTCCACTG 122 705 508 Antisense
CCCTCCACTGATTTTTCCTGTGAGC 556 259 523 Antisense
GATTTTTCCTGTGAGCACCTACATG 221 427 532 Antisense
GTGAGCACCTACATGTAAACCAAAA 524 483 542 Antisense
CTCTTAAAAGCCTACGCTGCCATGT 687 227 626 Antisense
CCTACGCTGCCATGTGGGATCTGAG 327 269 636 Antisense
GGGATCTGAGGCGAGTGCGGATGAG 488 495 651 Antisense
ATGGATATGTAACCTTCGACGTTTT 496 51 803 Antisense
CTATGTTTAACTCGCAGCAGGCGGA 434 223 926 Antisense
GCCCACAGCGAGTTGAAAATAGCGG 541 287 964 Antisense
Sequence Source Affymetrix Proprietary Database