[Home] | [Total List]

[179478_at]

Description C44H9.6 /REP_DB=WormBase Gene ID /WP=CE05422 /TR=Q18631 /GB=CAA99784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 70      4grp_total > 36      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 168.2
(3)
P 		135.8
(-0.3)
P 		108.7
(-3)
P 		118
(-2.1)
A 		60
B 123.6
(0.5)
P 		153.8
(3)
P 		82.1
(-3)
P 		113.7
(-0.4)
P 		72
C 140.9
(1)
P 		163.8
(3)
P 		94.3
(-3)
P 		134.6
(0.5)
P 		70
avr 144.2
(2.3) 		151.1
(3) 		95
(-3) 		122.1
(-0.1) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 144.4
(-2.8)
P 		176.5
(0)
P 		162.4
(-1.2)
P 		210.2
(3)
P 		144.7
(-2.8)
P 		142.5
(-3)
P 		68
B 133.8
(-1)
P 		99
(-3)
P 		154.7
(0.2)
P 		168.6
(1)
P 		203.4
(3)
P 		165.4
(0.8)
P 		104
C 149
(-1.1)
P 		153.1
(-0.8)
P 		205.3
(2.5)
P 		212.9
(3)
P 		119
(-3)
P 		176.1
(0.6)
P 		94
avr 142.4
(-3) 		142.9
(-2.9) 		174.1
(0.5) 		197.2
(3) 		155.7
(-1.5) 		161.3
(-0.9) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 61.3
(3)
P 		29.5
(-1.3)
P 		28.4
(-1.5)
P 		17.3
(-3)
A 		44
B 39.4
(3)
P 		38
(2.6)
P 		19
(-3)
P 		24.2
(-1.5)
P 		20
C 46.7
(2.9)
P 		47.1
(3)
P 		32.9
(-0.5)
P 		22.7
(-3)
P 		24
avr 49.1
(3) 		38.2
(0.6) 		26.8
(-1.8) 		21.4
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 26.6
(-3)
P 		62.8
(3)
P 		35.4
(-1.5)
P 		53.3
(1.4)
P 		43.7
(-0.2)
P 		34.7
(-1.7)
P 		36
B 46.5
(-1.4)
P 		33
(-3)
P 		37.6
(-2.4)
P 		44.7
(-1.6)
P 		82.6
(3)
P 		61.7
(0.5)
P 		50
C 55.2
(1.9)
P 		46.7
(-0.6)
P 		52.3
(1.1)
P 		42.8
(-1.7)
P 		38.5
(-3)
P 		58.9
(3)
P 		20
avr 42.8
(-2.5) 		47.5
(-0.4) 		41.8
(-3) 		46.9
(-0.7) 		54.9
(3) 		51.8
(1.6) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179478_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13599
Sequence Type Exemplar sequence
Representative Public ID C44H9.6 NCBI
Target Description C44H9.6 /REP_DB=WormBase Gene ID /WP=CE05422 /TR=Q18631 /GB=CAA99784.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073813(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073813 NCBI Caenorhabditis elegans C44H9.6 (C44H9.6) mRNA, complete cds. 11/11 None
SNAP00000031461 ENSEMBL cdna:SNAP chromosome:CEL140:V:12845155:12846959:-1 11/11 None
GENEFINDER00000031464 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12842978:12847394:-1 11/11 None
C44H9.6.2 ENSEMBL cdna:known chromosome:CEL140:V:12845099:12847424:-1 gene:C44H9.6 11/11 None
C44H9.6.1 ENSEMBL cdna:known chromosome:CEL140:V:12845099:12847919:-1 gene:C44H9.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12845154-12847394(-) 98.75 100.0
Public Domain and Genome References
Gene Title
Ensembl C44H9.6
Entrez Gene 183465 Entrez gene
SwissProt Q18631 EMBL-EBI
WormBase CE05422 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99784 Hypothetical protein C44H9.6 [Caenorhabditis elegans] ref|NP_506214.1| C44H9.6 [Caenorhabditis elegans] 0.0
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 2.0E-40
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 4.0E-40
blast CAD44097 Hypothetical protein C08B6.11 [Caenorhabditis elegans] ref|NP_741612.1| C08B6.11 [Caenorhabditis elegans] 2.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506214.1 1 399-419
C44H9.6.2 1 399-419
C44H9.6.1 1 399-419
SNAP00000031461 1 294-314
GENEFINDER00000031464 2 385-405,598-620
Sequence
Target Sequence 
>C. ELEGANS:179478_AT
aacatttgttccttcttggattaggagccttactcacatacgttccattattcaaaagaa
tgaacaagtggttcattgatatgaaaatactgtgtgatagcaagttcgtcgtagaagata
cttcagaacccatcatcacgaaggcattttcttctgaaaagtgtcatctattggaaagta
aaaaaactaatcagatggaagaaggaactggtgtttacacttcgaacaacaacaacaata
acaacaattatgatgaatatgatcgatctgaaatatctgatgagattcaacagatcggat
caaacgatggttcattgagtgatggttgtgattttattgaaacagaaataacaatcaata
atgaaacccctgacccaattgagccatccacggccgaagttgatcaacacacagatttgg
aagcacaaaaacttactgttctaaagaaaaaagcaatcagaaggagaaccgaaatgatgt
cttacagaagtttttggaagaagcgaccatattacagacgaagacaaagaaagaggtctg
cacagaaagagaaaagtctcccagaaagttttcaagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACATTTGTTCCTTCTTGGATTAGG 2 139 1217 Antisense
GGATTAGGAGCCTTACTCACATACG 607 507 1234 Antisense
TACTCACATACGTTCCATTATTCAA 372 645 1247 Antisense
GTGTGATAGCAAGTTCGTCGTAGAA 684 487 1308 Antisense
GAAGATACTTCAGAACCCATCATCA 626 337 1330 Antisense
GAACCCATCATCACGAAGGCATTTT 378 347 1342 Antisense
GGAACTGGTGTTTACACTTCGAACA 257 529 1420 Antisense
CAATCAATAATGAAACCCCTGACCC 436 181 1568 Antisense
AATTGAGCCATCCACGGCCGAAGTT 280 167 1593 Antisense
TCCACGGCCGAAGTTGATCAACACA 87 589 1603 Antisense
AAGTCTCCCAGAAAGTTTTCAAGCA 607 155 1770 Antisense
Sequence Source Affymetrix Proprietary Database