[Home] | [Total List]

[179477_at]

Description M04C3.3 /REP_DB=WormBase Gene ID /WP=CE18080 /TR=O62320 /GB=CAB07267.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 126.8
(3)
A 		79.5
(-3)
A 		109.7
(0.8)
A 		119.3
(2)
A 		47
B 142
(3)
M 		75.1
(-3)
A 		85.4
(-2.1)
A 		111.3
(0.2)
A 		67
C 113.1
(0.5)
A 		70
(-3)
A 		108.9
(0.2)
A 		143.4
(3)
A 		73
avr 127.3
(3) 		74.9
(-3) 		101.3
(0) 		124.7
(2.7) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 88.4
(-0.2)
A 		54.1
(-2.7)
A 		130.6
(3)
A 		63.7
(-2)
A 		50.5
(-3)
A 		128.4
(2.8)
A 		80
B 56.8
(-3)
A 		73.1
(-1.4)
A 		117.2
(2.8)
A 		87.5
(-0.1)
A 		88.8
(0.1)
A 		119.4
(3)
A 		63
C 41.7
(-2.7)
A 		94.3
(0.4)
A 		138.5
(3)
A 		62.1
(-1.5)
A 		36.2
(-3)
A 		116.4
(1.7)
P 		102
avr 62.3
(-2.7) 		73.8
(-1.7) 		128.8
(3) 		71.1
(-1.9) 		58.5
(-3) 		121.4
(2.4) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 46.2
(3)
A 		17.3
(-3)
A 		28.7
(-0.6)
A 		17.5
(-3)
A 		29
B 45.3
(3)
M 		18.6
(-3)
A 		19.8
(-2.7)
A 		23.7
(-1.9)
A 		27
C 37.4
(2.8)
A 		20.1
(-3)
A 		38
(3)
A 		24.2
(-1.6)
A 		18
avr 43
(3) 		18.7
(-3) 		28.8
(-0.5) 		21.8
(-2.2) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 16.3
(-2.6)
A 		19.3
(-1.5)
A 		28.4
(1.9)
A 		16.2
(-2.6)
A 		15.2
(-3)
A 		31.3
(3)
A 		16
B 19.7
(-3)
A 		24.3
(-1.9)
A 		28.5
(-0.9)
A 		23.2
(-2.2)
A 		36.1
(1)
A 		44.5
(3)
A 		25
C 15.4
(-2.2)
A 		28.8
(0.8)
A 		35.2
(2.2)
A 		12.5
(-2.8)
A 		11.7
(-3)
A 		39
(3)
P 		27
avr 17.1
(-3) 		24.1
(-1) 		30.7
(0.8) 		17.3
(-2.9) 		21
(-1.9) 		38.3
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179477_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14357
Sequence Type Exemplar sequence
Representative Public ID M04C3.3 NCBI
Target Description M04C3.3 /REP_DB=WormBase Gene ID /WP=CE18080 /TR=O62320 /GB=CAB07267.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075382 NCBI Caenorhabditis elegans M04C3.3 (M04C3.3) mRNA, complete cds. 11/11 None
GENEFINDER00000024083 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19441236:19451474:-1 11/11 None
M04C3.3 ENSEMBL cdna:known chromosome:CEL140:V:19446727:19448150:-1 gene:M04C3.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024080 2/11 Cross Hyb Matching Probes None
SNAP00000024081 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19446726-19447506(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M04C3.3
Entrez Gene 180273 Entrez gene
SwissProt O62320 EMBL-EBI
WormBase CE18080 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 0.0
blast CAD54148 Hypothetical protein M04C3.1b [Caenorhabditis elegans] emb|CAD54124.1| Hypothetical protein M04C3.1b [Caenorhabditis elegans] ref|NP_872172.1| M04C3.1b [Caenorhabditis elegans] 0.0
blast CAB07266 Hypothetical protein M04C3.2 [Caenorhabditis elegans] ref|NP_507784.2| M04C3.2 [Caenorhabditis elegans] 0.0
blast CAB07267 Hypothetical protein M04C3.3 [Caenorhabditis elegans] ref|NP_507783.1| M04C3.3 [Caenorhabditis elegans] 1.0E-101
blast AAK29789 Hypothetical protein C49A9.2 [Caenorhabditis elegans] ref|NP_500937.1| C49A9.2 [Caenorhabditis elegans] 5.0E-82
blast AAC48085 Hypothetical protein F58F9.4 [Caenorhabditis elegans] ref|NP_500939.1| F58F9.4 [Caenorhabditis elegans] 2.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR000330 EMBL-EBI SNF2 related domain 3.2E-7
Sequence
Target Sequence 
>C. ELEGANS:179477_AT
attcaagtttttcgctgcaattagagaatatgatgtcgagggtgaagtgttgttaaaaat
catcggtactggttccaataacaatctagcatatcgtattatggaatcaagactaaatga
agttggcataagactgggtagttttttatctgctgttgctcagatgggggagcccatcag
agatttcgtggctgaagagagaaatttaaaagtcaccattgatggtagtgttgccaaggt
agaagacattgaaggcaatttggaaaaaaacgaagaaggagttttagtattccgtacaga
agactttggattagttagagctcttgatcaaaagctttcaccgggccaatatcaaataac
tgttcgagcaacaaaatttttggaaagaaaaatattcaccacaatgaattattgtgcgga
agctcagaagattgctccattggtgactgcaacagaaagtggatcaatattcaaaagagt
tgcctcaatctttcaaaaatcgccacaagaaaacatccctgggtcgacatgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAAGTTTTTCGCTGCAATTAGA 472 11 24 Antisense
GATGTCGAGGGTGAAGTGTTGTTAA 70 395 55 Antisense
GTGTTGTTAAAAATCATCGGTACTG 264 483 70 Antisense
GAAGTTGGCATAAGACTGGGTAGTT 253 335 142 Antisense
GACTGGGTAGTTTTTTATCTGCTGT 520 375 155 Antisense
GCTGTTGCTCAGATGGGGGAGCCCA 469 291 175 Antisense
GGGAGCCCATCAGAGATTTCGTGGC 132 495 191 Antisense
CACCATTGATGGTAGTGTTGCCAAG 288 201 237 Antisense
GAAGGAGTTTTAGTATTCCGTACAG 205 333 298 Antisense
TCAAAAGAGTTGCCTCAATCTTTCA 533 629 494 Antisense
AGAAAACATCCCTGGGTCGACATGC 74 73 531 Antisense
Sequence Source Affymetrix Proprietary Database