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[179474_at]

Description F26D2.3 /REP_DB=WormBase Gene ID /WP=CE23683 /TR=Q9U3H9 /GB=CAB04185.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 16.1
(0.9)
A 		17.7
(3)
A 		16.4
(1.3)
A 		13.1
(-3)
A 		5
B 29.1
(-0.4)
A 		9.1
(-3)
A 		10.6
(-2.8)
A 		55.3
(3)
A 		46
C 4.4
(-3)
A 		10.8
(-2.4)
A 		6.2
(-2.8)
A 		72.7
(3)
A 		68
avr 16.5
(-2.1) 		12.5
(-2.8) 		11.1
(-3) 		47
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 50.4
(2.2)
A 		5.8
(-3)
A 		7.6
(-2.8)
A 		34.5
(0.3)
A 		24.1
(-0.9)
A 		57.7
(3)
A 		52
B 26.6
(-0.7)
A 		9.3
(-2.8)
A 		12.4
(-2.4)
A 		7.5
(-3)
A 		57.6
(3)
A 		44
(1.4)
A 		50
C 4.5
(-3)
A 		23.2
(0.2)
A 		5.4
(-2.8)
A 		15.2
(-1.2)
A 		19.4
(-0.5)
A 		40
(3)
A 		36
avr 27.2
(-0.1) 		12.8
(-2.3) 		8.5
(-3) 		19.1
(-1.4) 		33.7
(0.9) 		47.2
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.9
(3)
A 		3.8
(-0.2)
A 		4.3
(0.6)
A 		1.9
(-3)
A 		4
B 9.3
(1.4)
A 		2.3
(-3)
A 		2.5
(-2.9)
A 		11.8
(3)
A 		10
C 1.4
(-3)
A 		3.1
(-2.1)
A 		2.1
(-2.6)
A 		12.3
(3)
A 		11
avr 5.5
(-0.4) 		3.1
(-2.9) 		3
(-3) 		8.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 9.3
(0.7)
A 		2.1
(-2.8)
A 		1.7
(-3)
A 		8.8
(0.5)
A 		7.3
(-0.3)
A 		14
(3)
A 		12
B 9.3
(-1)
A 		3.1
(-2.7)
A 		3
(-2.7)
A 		2
(-3)
A 		23.4
(3)
A 		16.4
(1)
A 		21
C 1.7
(-2.9)
A 		7.1
(-0.2)
A 		1.4
(-3)
A 		3
(-2.2)
A 		6.3
(-0.6)
A 		13.4
(3)
A 		12
avr 6.8
(-0.7) 		4.1
(-2) 		2
(-3) 		4.6
(-1.8) 		12.3
(1.9) 		14.6
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 179474_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13584
Sequence Type Exemplar sequence
Representative Public ID F26D2.3 NCBI
Target Description F26D2.3 /REP_DB=WormBase Gene ID /WP=CE23683 /TR=Q9U3H9 /GB=CAB04185.2 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028683(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028683 NCBI Caenorhabditis elegans F26D2.3a (F26D2.3) mRNA, complete cds. 9/11 None
F26D2.3a ENSEMBL cdna:known chromosome:CEL140:V:16410546:16412853:1 gene:F26D2.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037733 4/11 Cross Hyb Matching Probes None
GENEFINDER00000037745 4/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180103 2 1 NM_001028683 179474_at (9)
NM_001028684 175116_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16410545-16412853(+) 100.0 100.0
Public Domain and Genome References
Ensembl F26D2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04185 Hypothetical protein F26D2.3a [Caenorhabditis elegans] ref|NP_001023854.1| F26D2.3a [Caenorhabditis elegans] 0.0
blast AAB66233 Hypothetical protein R07C3.3 [Caenorhabditis elegans] ref|NP_493857.1| R07C3.3 [Caenorhabditis elegans] 0.0
blast CAA18374 Hypothetical protein ZK1225.2 [Caenorhabditis elegans] ref|NP_493314.1| ZK1225.2 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR003406 EMBL-EBI Glycosyl transferase, family 14 3.9E-88
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023854.1 1 7-29
F26D2.3a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:179474_AT
caagtggttttgtgcaggcgtcgctgtcgagagctgtagtggaatggttggtgaatgaag
ttgatgtatcgattcttttgcagcaatttccggaatatggcgctgatgagcagtttatct
caactttccaatcgaaccaggatttcaaaatgccaggtcattttacaaatgaatgcttcc
acaatgacacatctaaaatattcagattctcgcgttgggtacccataaatctcgagagat
cttccaattgtgcctctggtaccgtaagacatgatatttgcattttcgggattgaagact
tcctcgcagtttcaaaatatcccactctgacatttgatttttccattatagagtgtaccg
ccgagcttttgcataaccggacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGTGGTTTTGTGCAGGCGTCGCT 349 159 887 Antisense
GCGTCGCTGTCGAGAGCTGTAGTGG 104 291 904 Antisense
ATCTCAACTTTCCAATCGAACCAGG 504 31 1003 Antisense
GAATGCTTCCACAATGACACATCTA 366 329 1057 Antisense
TATTCAGATTCTCGCGTTGGGTACC 492 663 1085 Antisense
GTTGGGTACCCATAAATCTCGAGAG 549 1 1100 Antisense
TTGTGCCTCTGGTACCGTAAGACAT 320 709 1134 Antisense
GAAGACTTCCTCGCAGTTTCAAAAT 633 315 1180 Antisense
AATATCCCACTCTGACATTTGATTT 364 173 1202 Antisense
ATTATAGAGTGTACCGCCGAGCTTT 592 13 1231 Antisense
GCCGAGCTTTTGCATAACCGGACCT 208 283 1246 Antisense
Sequence Source Affymetrix Proprietary Database